Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq11610 109 5e-19 seq17057 104 2e-17 seq311227 98.7 1e-15 seq2312 91.5 1e-13 seq59220 86.0 6e-12 >seq11610 Length=252271 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 || |||| || ||||| | ||||||||||| || ||||| || || || |||| | Sbjct 43108 AAGCGCAGGACCAAGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGC 43167 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||||| |||||||| || ||| |||||| | ||||| || || || ||||| || Sbjct 43168 CCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCC 43227 Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726 ||||| ||| || || | | || | ||||| ||||||||||||| | ||| Sbjct 43228 TTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 43287 Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | ||||| |||||||| || || ||||| || ||||| Sbjct 43288 ATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 43325 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || || || |||| | ||||| |||||||| || Sbjct 43357 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCC 43416 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| | ||||| || || || ||||| || ||||| ||| || || Sbjct 43417 GCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTG 43476 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | ||||| |||||||| || Sbjct 43477 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAGGTC 43536 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 43537 TTCACGAAGATCTGCAT 43553 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || || || |||| | ||||| |||||||| || Sbjct 43585 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCT 43644 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| | ||||| || ||||| ||||||||||| || ||| || || Sbjct 43645 GCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCTTCTTTTTCTTGGATCTTCCCCTTG 43704 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | ||||||||||| | || | || || || |||| ||| Sbjct 43705 ACATTCTCGATGGTGTCACTAGGCTCCACCTCCAGAGTGATGGTTTTACCAGTCAGGGTT 43764 Query 139748 TTTACGAATATTTGCAT 139764 ||||| || || ||||| Sbjct 43765 TTTACAAAGATCTGCAT 43781 >seq17057 Length=148899 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||||||||| || ||||| ||||| | |||| ||||| ||||| || || Sbjct 117191 GTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 117132 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || || ||||| || || || |||||||| || || ||| || || Sbjct 117131 GCAAAGATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 117072 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | ||||||||||||| || Sbjct 117071 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 117012 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| |||||||| Sbjct 117011 TTCACGAAGATTTGCAT 116995 >seq311227 Length=303 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139553 AAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCT 139612 || ||||| || | ||| |||||||| || || || ||||||| ||| || ||| Sbjct 197 AATACTAAATGGAGTGTACTTTCTTTTTGGATATTGTAGTCGCTCAGTGTTCTTCCATCT 138 Query 139613 TCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 139672 || | ||||||||||||| | || | |||||||||||| || || || ||||| || || Sbjct 137 TCTAACTGTTTACCAGCAAATATTAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCT 78 Query 139673 GTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTC 139732 ||| ||| ||| | | || | |||||| | || || || || | ||| | || Sbjct 77 TGGATCTTTGCTTTCACATTCTCTATTGTGTCTGATGGTTCTACTTCCAAGGTTATTGTT 18 Query 139733 TTGCCGGTCAACGTTTT 139749 || |||||||| ||||| Sbjct 17 TTTCCGGTCAAAGTTTT 1 >seq2312 Length=925560 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGT 139610 ||| |||| |||| || ||||| ||||||||||| || || || || | || | | Sbjct 16630 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-T 16572 Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670 |||| || || || ||||| ||||||| | |||||| | | ||| || ||||| || | Sbjct 16571 CTTCCAGTTGCTTGCCAGCTAAGATCAGTCTTTGCTGGTAAGAAGGAATTCCTTCCTTAT 16512 Query 139671 CGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 | |||||| |||| | ||| ||| || | |||||||||||| | || | | Sbjct 16511 CCTGGATTTTGGCCTTTACATTTTCTGTTGTATCCGAGGGCTCCACCTCGAGAGTGATGG 16452 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || |||| || || ||||| || ||||| Sbjct 16451 TCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 16418 >seq59220 Length=24887 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGT 139610 ||| |||| |||| || ||||| ||||||||||| || || || || | || | | Sbjct 15060 CAACACTAGATGAAGAGTGGACTCATTTTGAATGTTGTAGTCAGACAAAGTACGTCCA-T 15002 Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670 |||| || || || |||||| ||||||| | ||||| || ||||| || |||||||| | Sbjct 15001 CTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTAGTCAGGAGGAATTCCTTCTTTAT 14942 Query 139671 CGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 | ||| || |||| | ||| | ||| || | |||||| | ||| | || | Sbjct 14941 CCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGAACTCGAGAGTGATGA 14882 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || |||| || || || || || ||||| Sbjct 14881 TCTTCCCTGTCACGGTCTTCACAAAAATCTGCAT 14848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 492881892058400