Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq52311 248 1e-60 seq197 138 2e-27 seq8207 125 1e-23 seq4890 98.7 1e-15 seq297100 96.9 5e-15 >seq52311 Length=1231 Score = 248 bits (274), Expect = 1e-60 Identities = 621/941 (66%), Gaps = 2/941 (0%) Strand=Plus/Minus Query 79612 AACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATT 79671 || || || ||||| | |||||| || |||| |||| || | | |||||| |||| Sbjct 1185 AATGCTACTGATGCTAAATTACATACTGCTATTTCATCTTTATTTGTAAATTGTACTATT 1126 Query 79672 TCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA 79731 ||| || | ||||| | || || ||||||||||||| ||||||||| ||| ||| Sbjct 1125 TCACAACATAAATTACTTGATTTTATTGTTCCTAAATTTTTTTGATTACTTTTTGCATTA 1066 Query 79732 CACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 79791 || ||||| ||||| | || | || || || ||||| || || |||| || || || Sbjct 1065 CATGCATCTTTATATAACATATATGGTGTTCCTGTTTCTATTTGTGATTGTAATATTGCA 1006 Query 79792 TTCCAGACGACTCGAGCCTTTA-TTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGT 79850 ||| | | | || || | | || | || ||| || ||| |||||| Sbjct 1005 AACCATAATTTTTGTGCTGGTACTGTTTTACGTCCCATTCCTTTTTC-TTCATATTGTTC 947 Query 79851 ATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACA 79910 ||||||| || || || |||||||| || || | |||||| |||||| || ||||| Sbjct 946 ATATAATTTATCAAATTCTTCTCCCCATACTTCATATAATCCTCTACATTCATCTGGACA 887 Query 79911 CATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAG 79970 ||| || | ||| | | || | | ||||| ||||||||| | ||| || ||||| | Sbjct 886 CATTAATGTCCATTGTTTATTTGCTTCTACTCTTTTCATAAATAAATCTGGTATCCATAA 827 Query 79971 AGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 80030 || ||||| |||||| | ||| || || | || ||| ||| | | ||| | Sbjct 826 TGCATAAAATAAATCTCTTGCTCTTAAATCTTCATGACCATGATTTTTTCTTAAATCTAA 767 Query 80031 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTT 80090 | | ||||| | |||||| ||||| || ||||| || | ||| || ||| Sbjct 766 AAGTTTAAATATATCTGCATGCCATGGTTCTAAATATATTGCAAATGAACCCTTTCTTTT 707 Query 80091 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 80150 ||||| || |||| || | || || |||| | | | | |||||||| | || Sbjct 706 TCCACCTCCTTGGTCTACATACTTTGCAGTTGAATTAAATATTTTTAACATTGGTACTAT 647 Query 80151 ACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT 80210 ||||| ||| | ||||| || || ||||| |||||| || | ||| ||| ||| Sbjct 646 TCCATTAGATATTCCATTAGTTCCTCTAATATATGATCCACTTGCTCTAATTTTATGAAT 587 Query 80211 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 80270 |||| || ||||| ||||| ||| || ||||| ||| ||||||| || || | Sbjct 586 AGATAATCCAATTCCTCCTGCACACTTACTTATAAATGCACATTGTTTTAATGTTGCAAA 527 Query 80271 GATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 80330 || || |||| |||||| ||| | | || |||||| |||||||| || Sbjct 526 TATTCCTTCTAATGAATCATCTTGCATATCTAATAAAAAACATGATGACATTTGTGGATT 467 Query 80331 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAG 80390 | || || | ||||||||| || || | || || ||||| || ||| | || || Sbjct 466 TTTTGTACCAGAATTAAATAATGTTGGTGTTGCATGTGTAAAATATCTTTGACTCATTAA 407 Query 80391 ATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCAT 80450 ||| || || | || | | ||||| || | ||| ||||| | || | ||| Sbjct 406 ATTATATGTTTGTATTGTTTTTTCTAAATTTCCACAATGTATTCCACATGATACTCTCAT 347 Query 80451 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTC 80510 |||||| || || |||||||| | || || ||||| | | || || || ||| |||| Sbjct 346 TAACATATGTTGTGGTCTTTCTGCTATTTTTCCATTTACTCTTAATAAATATGATCTTTC 287 Query 80511 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 80551 || |||||||| |||||||| | ||| ||| |||| || Sbjct 286 TAATGTTTTAAATCCAAAATAATCATATTGAAAATCTCTTT 246 >seq197 Length=217379 Score = 138 bits (152), Expect = 2e-27 Identities = 105/124 (85%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| ||||| ||||| |||||||||||||| || ||||| || || || || | Sbjct 121521 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 121462 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| || ||||| || |||||||||||||| ||||| ||||||||||||| Sbjct 121461 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGG 121402 Query 50102 CAAC 50105 | || Sbjct 121401 CTAC 121398 Score = 105 bits (116), Expect = 1e-17 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||||| |||||||| || | |||||||||||||| ||||| |||||||| ||||| Sbjct 119557 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 119498 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 || || || || |||||||| | || ||||||||||| |||||| Sbjct 119497 AATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCT 119452 >seq8207 Length=439286 Score = 125 bits (138), Expect = 1e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 388244 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 388185 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || ||||||||||||| || ||||||||||| || || ||||| || || | | |||| Sbjct 388184 GACTCATTATTTCCCAGTATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 388125 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 388124 CTGTTTCTTATACCATA 388108 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||| ||||| |||||||| ||||||||||| || | || || || |||| | ||| Sbjct 377331 ACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 377272 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || |||||||| ||||| || | ||| |||||| | | || || ||||||| ||| Sbjct 377271 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGT 377212 Query 80059 TCCAAGTATATGGC 80072 |||| ||| || || Sbjct 377211 TCCAGGTAAATAGC 377198 Score = 96.9 bits (106), Expect = 5e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 || |||||||| || || | || | ||| | ||||| || || || || ||||| ||| Sbjct 383748 TAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCATAA 383689 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 ||||||||||| || |||| |||||| | || || ||| | || ||||| || || Sbjct 383688 TAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGTAC 383629 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479 | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 383628 CTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGCGT 383569 Query 79480 TTATTAGA 79487 ||||| || Sbjct 383568 TTATTCGA 383561 >seq4890 Length=280387 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || ||||| || || || || |||||||| |||||||| ||||| || || | || || Sbjct 127883 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 127824 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||| ||||| | ||||| || || || ||||| ||||||||||| || |||||||| Sbjct 127823 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 127764 Query 50104 AC 50105 || Sbjct 127763 AC 127762 Score = 87.8 bits (96), Expect = 3e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516 ||| ||||| ||||||| || ||||||| ||| | ||||||||| |||||||||||| | Sbjct 118602 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCTTGTTTATACATTTTCCAGATGTCAGG 118543 Query 50517 ATATTGGATTGGGAAAATAACAAATC 50542 || |||||||| || || ||||||| Sbjct 118542 GTACTGGATTGGAAAGATGACAAATC 118517 >seq297100 Length=295 Score = 96.9 bits (106), Expect = 5e-15 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 50179 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCG 50238 || |||||||| || |||| | |||| ||||| |||||| | |||| | || Sbjct 55 ATTGTTTCTATTGCCATAAACAATCTCATTTTCTCATTTTCATCTTTTATATAATTCTCT 114 Query 50239 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 50298 ||||| | |||||| | || |||||||||||||| | || || |||||| ||||||| Sbjct 115 ATCAATAAACTATATGTCTCAGAATGAATGTTTTCCACTGCGATTTGAAATGAGTAGAAA 174 Query 50299 CATCT-AGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCA--GCTAAATTTTCATTC 50355 | ||| ||| || | || || ||| ||| || |||| || | ||||||||||| Sbjct 175 C-TCTGAGCTTCAGGAACCTTCACATCTCTAAGAAAT--TTGAGTGCTAAATTTTCCAAA 231 Query 50356 ACTATTCCGTCACTG 50370 || |||||||||||| Sbjct 232 ACAATTCCGTCACTG 246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 713661312150280