Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq197 111 1e-19 >seq197 Length=217379 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||| ||||| ||||||||||| || ||||| || | || ||||||| ||||||||| | Sbjct 121521 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 121462 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| || || |||||||| || || || ||||| ||||| | Sbjct 121461 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGG 121402 Query 14014 CTATTAATCGTTCTCC 14029 ||| | |||||||| Sbjct 121401 CTACCACACGTTCTCC 121386 Score = 96.9 bits (106), Expect = 3e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || ||||| | ||||| || | ||||| || |||||||||||||| || || Sbjct 123086 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 123027 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 |||||||| |||||||||||||| |||||||||||| Sbjct 123026 TCCAGTGAAATATTTTCCATAAAGTCAAATGGATTT 122991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476650682801800