Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq311227 89.7 4e-13 seq11610 89.7 4e-13 seq2656 86.0 5e-12 seq2274 86.0 5e-12 seq59220 82.4 6e-11 >seq311227 Length=303 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | ||||||||| || ||||||| || || || ||||| | |||||| ||| | Sbjct 212 CCTCCTCTCAGTCTTAATACTAAATGGAGTGTACTTTCTTTTTGGATATTGTAGTCGCTC 153 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | | | || || || ||||| || ||||| || || || || ||||| | || Sbjct 152 AGTGTTCTTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGCTGATCTGGTGGA 93 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| |||| || | | | |||||| | || || Sbjct 92 ATTCCTTCCTTATCTTGGATCTTTGCTTTCACATTCTCTATTGTGTCTGATGGTTCTACT 33 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTT 43094 || | ||||| ||||||||||| | |||||| Sbjct 32 TCCAAGGTTATTGTTTTTCCGGTCAAAGTTTT 1 >seq11610 Length=252271 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||| || | |||| ||| || || | ||||| || |||| || || | || ||| Sbjct 43573 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 43632 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | |||||||| ||||| ||||| | ||| || || | || | ||||||||||| | Sbjct 43633 AGCTGTTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCTTCTTTTTCTTGG 43692 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 ||| | | ||||| | | | ||||| | || ||| || || | || || ||||| Sbjct 43693 ATCTTCCCCTTGACATTCTCGATGGTGTCACTAGGCTCCACCTCCAGAGTGATGGTTTTA 43752 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCATTTTCT 43114 || || || ||||| ||||| || |||||| ||| Sbjct 43753 CCAGTCAGGGTTTTTACAAAGATCTGCATTGTCT 43786 >seq2656 Length=305558 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 42881 CGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGG 42940 |||| ||| | ||||| ||||| | ||| | |||| ||||||||| | |||||| || | Sbjct 78853 CGCCACCATGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATATTGTAGTCAG 78794 Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCG 43000 |||| |||| | | || || | ||| ||||| ||||| |||| || || || || | | Sbjct 78793 ACAAAGTACATCCATCTTCTAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAG 78734 Query 43001 GCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | | ||||| || || | || | || || | | | ||| || | ||||| Sbjct 78733 GAATTCCTTCCTTATCCTGGGTCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGA 78674 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 | || | || || || || || | || || ||||||||||| ||||| || Sbjct 78673 CCTCAAGAGTGATGGTCTTCCCCATCAGGGTCTTCACAAAAATCTGCATCTT 78622 >seq2274 Length=301413 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| ||||| ||||| | ||| | |||| ||||||||| | ||||| || ||| Sbjct 270433 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 270492 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||| || | || |||| ||| ||||| | ||| |||| || || || || | || Sbjct 270493 AAAGTATGTCCATCTTCCAGTTGCTTGCCAGGAAAGATCAGTCTTTGCTGGTCAGGAGGA 270552 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| | || || | | | ||| || | || ||| Sbjct 270553 ATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCTAGGGCTTGACC 270612 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || ||||| || || || ||||||||||| ||||| || Sbjct 270613 TCGAGAGTGATGGTTTTCTTCGTCAGGGTCTTCACAAAAATCTGCATCTT 270662 >seq59220 Length=24887 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| ||||| ||||| | ||| | |||| ||| ||||| | ||||| || ||| Sbjct 15074 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCATTTTGAATGTTGTAGTCAGAC 15015 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || |||||| | || |||| ||| ||||| ||||| |||| || || | || | || Sbjct 15014 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTAGTCAGGAGGA 14955 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| | || || | | | ||| || | ||||| Sbjct 14954 ATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGAAC 14895 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || | || || || | || ||||||||||| ||||| || Sbjct 14894 TCGAGAGTGATGATCTTCCCTGTCACGGTCTTCACAAAAATCTGCATCTT 14845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378984383068266