Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq52311 248 1e-60 seq8207 138 2e-27 seq197 123 3e-23 seq4890 107 3e-18 seq297100 91.5 2e-13 >seq52311 Length=1231 Score = 248 bits (274), Expect = 1e-60 Identities = 621/941 (66%), Gaps = 2/941 (0%) Strand=Plus/Minus Query 71695 AAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATT 71754 || || || ||||| | |||||| || |||| |||| || | | |||||| ||| Sbjct 1185 AATGCTACTGATGCTAAATTACATACTGCTATTTCATCTTTATTTGTAAATTGTACTATT 1126 Query 71755 TCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA 71814 ||| || | |||||| | || || ||||||||||||| ||||||||| ||| ||| Sbjct 1125 TCACAACATAAATTACTTGATTTTATTGTTCCTAAATTTTTTTGATTACTTTTTGCATTA 1066 Query 71815 CACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 71874 || ||||| ||||| | ||| | || || || ||||| || || |||| || || || Sbjct 1065 CATGCATCTTTATATAACATATATGGTGTTCCTGTTTCTATTTGTGATTGTAATATTGCA 1006 Query 71875 TTCCAGACGACTCGAGCCTTTATTATATT-CTTGTATCTCTTTTCTCTTTCGTATTGTGT 71933 ||| | | | || || | | || | | || ||| |||| | |||||| Sbjct 1005 AACCATAATTTTTGTGCTGGTACTGTTTTACGTCCCATTCCTTTTTCTT-CATATTGTTC 947 Query 71934 ATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACA 71993 ||||||| || || || |||||||| | | | |||||| |||||||| ||||| Sbjct 946 ATATAATTTATCAAATTCTTCTCCCCATACTTCATATAATCCTCTACATTCATCTGGACA 887 Query 71994 CATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAG 72053 ||| |||| ||| | | || | | ||||| ||||||||| | ||| || ||||| | Sbjct 886 CATTAATGTCCATTGTTTATTTGCTTCTACTCTTTTCATAAATAAATCTGGTATCCATAA 827 Query 72054 AGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 72113 || ||||| |||||| | ||| || || | || ||| ||| | | ||| | Sbjct 826 TGCATAAAATAAATCTCTTGCTCTTAAATCTTCATGACCATGATTTTTTCTTAAATCTAA 767 Query 72114 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTT 72173 | | ||||| | |||||| ||||| || ||||| || | ||| | ||| Sbjct 766 AAGTTTAAATATATCTGCATGCCATGGTTCTAAATATATTGCAAATGAACCCTTTCTTTT 707 Query 72174 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 72233 ||||| || |||| || | || || |||| | | | | |||||||| | || Sbjct 706 TCCACCTCCTTGGTCTACATACTTTGCAGTTGAATTAAATATTTTTAACATTGGTACTAT 647 Query 72234 ACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAAT 72293 ||||| ||| ||||| || || ||||| |||||| || | ||| || ||| Sbjct 646 TCCATTAGATATTCCATTAGTTCCTCTAATATATGATCCACTTGCTCTAATTTTATGAAT 587 Query 72294 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 72353 |||| || ||||| ||||| ||| || ||||| ||| ||||||| || || | Sbjct 586 AGATAATCCAATTCCTCCTGCACACTTACTTATAAATGCACATTGTTTTAATGTTGCAAA 527 Query 72354 GATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 72413 || || |||| |||||| ||| | | || |||||| |||||||| || Sbjct 526 TATTCCTTCTAATGAATCATCTTGCATATCTAATAAAAAACATGATGACATTTGTGGATT 467 Query 72414 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAG 72473 | || || | ||||||||| || || | || || ||||| || ||| | || || Sbjct 466 TTTTGTACCAGAATTAAATAATGTTGGTGTTGCATGTGTAAAATATCTTTGACTCATTAA 407 Query 72474 ATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCAT 72533 ||| || || | || | | ||||| || | ||||||||| | || | ||| Sbjct 406 ATTATATGTTTGTATTGTTTTTTCTAAATTTCCACAATGTATTCCACATGATACTCTCAT 347 Query 72534 TAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTC 72593 ||||||||| || |||||||| | || || ||||| | | || || || ||| |||| Sbjct 346 TAACATATGTTGTGGTCTTTCTGCTATTTTTCCATTTACTCTTAATAAATATGATCTTTC 287 Query 72594 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 72634 || |||||||| |||||||| | ||| ||| |||| || Sbjct 286 TAATGTTTTAAATCCAAAATAATCATATTGAAAATCTCTTT 246 >seq8207 Length=439286 Score = 138 bits (152), Expect = 2e-27 Identities = 112/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | | Sbjct 388244 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 388185 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 |||||||||||||||| || ||||||||||| ||||| ||||| || || | | || | Sbjct 388184 GACTCATTATTTCCCAGTATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 388125 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | ||||| Sbjct 388124 CTGTTTCTTATACCAT 388109 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||| ||||| |||||||| ||||||||||| || | || || || |||| | ||| Sbjct 377331 ACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 377272 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || |||||||| ||||| || | ||| |||||| | | || || ||||||| ||| Sbjct 377271 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGT 377212 Query 72142 TCCAAGTATATGGC 72155 |||| ||| || || Sbjct 377211 TCCAGGTAAATAGC 377198 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440 |||| || || ||||| || | | | ||| || ||||| || || || || ||||||| Sbjct 383750 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 383691 Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500 ||||||||||||| || |||| |||||| | || || || || || ||||| || | Sbjct 383690 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGT 383631 Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560 | | | |||||||| || ||||| | ||||| || ||||| || || || | || | Sbjct 383630 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGC 383571 Query 71561 TCTTATTAGA 71570 ||||| || Sbjct 383570 GTTTATTCGA 383561 >seq197 Length=217379 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| ||||| | ||| |||||||||||||| || ||||| || || || || | Sbjct 121521 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 121462 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| || ||||| || |||||||||||||| ||||| ||||| ||||||| Sbjct 121461 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGG 121402 Query 42207 C 42207 | Sbjct 121401 C 121401 Score = 102 bits (112), Expect = 1e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||||| || ||||| || | |||||||||||||| ||||| |||||||| ||||| Sbjct 119557 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 119498 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 || || || || |||||||| | ||| ||||||| ||| |||||| Sbjct 119497 AATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCT 119452 >seq4890 Length=280387 Score = 107 bits (118), Expect = 3e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 |||||||| || || | || |||||||| |||||||| ||||| || || | || || Sbjct 127883 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 127824 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 ||||| ||||||| ||||| ||||| || ||||| ||||||||||| || |||||||| Sbjct 127823 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 127765 >seq297100 Length=295 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 42284 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCG 42343 || |||||||| || |||| | |||| ||||| |||||| | ||| | || Sbjct 55 ATTGTTTCTATTGCCATAAACAATCTCATTTTCTCATTTTCATCTTTTATATAATTCTCT 114 Query 42344 ATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 42403 ||||| | |||||| | || |||||||||||||| | || || |||||| ||||||| Sbjct 115 ATCAATAAACTATATGTCTCAGAATGAATGTTTTCCACTGCGATTTGAAATGAGTAGAAA 174 Query 42404 CATCTG-GCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCA--GCTAAATTTTCGTTC 42460 | |||| || || | ||||| || ||| || |||| || | ||||||||||| Sbjct 175 C-TCTGAGCTTCAGGAACCTTCACATCTCTAAGAAAT--TTGAGTGCTAAATTTTCCAAA 231 Query 42461 ACTATTCCGTCACTG 42475 || |||||||||||| Sbjct 232 ACAATTCCGTCACTG 246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 666834034984520