Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq311227 134 1e-26 seq2312 102 6e-17 seq2274 98.7 7e-16 seq11610 96.9 2e-15 seq59220 95.1 9e-15 seq512960 93.3 3e-14 seq13283 93.3 3e-14 seq2656 93.3 3e-14 >seq311227 Length=303 Score = 134 bits (148), Expect = 1e-26 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| |||||| |||||||| || || |||||||| || ||||| ||||| Sbjct 212 CCTCCTCTCAGTCTTAATACTAAATGGAGTGTACTTTCTTTTTGGATATTGTAGTCGCTC 153 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | |||||||| ||||| ||||| |||| |||||||| || || |||| Sbjct 152 AGTGTTCTTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGCTGATCTGGTGGA 93 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| || || || |||||| || ||| | ||||| || || |||||| Sbjct 92 ATTCCTTCCTTATCTTGGATCTTTGCT-TTCACATTCTCTATTGTGTCTGATGGTTCTAC 34 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTT 15348 || ||||| || ||||| || |||| |||||| Sbjct 33 TTCCAAGGTTATTGTTTTTCCGGTCAAAGTTTT 1 >seq2312 Length=925560 Score = 102 bits (112), Expect = 6e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCT 15195 |||||| | | ||| || |||| |||||| ||||| || ||||| |||||||| || Sbjct 16645 GCCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 16586 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 | | | | | ||||| | ||| |||||||| | |||| | ||| |||| || Sbjct 16585 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCTAAGATCAGTCTTTGCTGGTAAGAAGG 16526 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||||||| || || |||||| ||||||| ||||| | ||||| || || Sbjct 16525 AATTCCTTCCTTATCCTGGATTTTGGCCTTTACATTTTCTGTTGTATCCGAGGGCTCCAC 16466 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | || ||||| || |||||||| || || || ||||| ||||| || Sbjct 16465 CTCGAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCATCTT 16415 >seq2274 Length=301413 Score = 98.7 bits (108), Expect = 7e-16 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| || |||| |||||| ||||| || ||||| |||||||| || Sbjct 270433 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 270492 Query 15197 AGAAT-TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 | | | | || | ||||| | ||| ||||||| | |||| | ||| ||||| || Sbjct 270493 AAAGTATGTC-CATCTTCCAGTTGCTTGCCAGGAAAGATCAGTCTTTGCTGGTCAGGAGG 270551 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTA-TTTTCTA 15314 |||||||||||| || || ||| ||||||| ||||||| ||||| ||| | | Sbjct 270552 AATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATC-CTAGGGCTTGA 270610 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 | || | || |||||||| ||||| || || |||||||| ||||| || Sbjct 270611 CCTCGAGAGTGATGGTTTTCTTCGTCAGGGTCTTCACAAAAATCTGCATCTT 270662 >seq11610 Length=252271 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || ||||| ||||| || |||||||| || || | | | | ||||| | ||| Sbjct 43579 TGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGT 43638 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| || | ||||| | || ||||| || || |||||||| || || || Sbjct 43639 TTGCCTGCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCTTCTTTTTCTTGGATCTTC 43698 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 | ||| ||| | || ||||| || ||| || || || | || ||||||||||| ||| Sbjct 43699 CCCTTGACATTCTCGATGGTGTCACTAGGCTCCACCTCCAGAGTGATGGTTTTACCAGTC 43758 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || ||||||||||| || ||||| Sbjct 43759 AGGGTTTTTACAAAGATCTGCAT 43781 >seq59220 Length=24887 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| || |||| |||||| ||||| || ||||| |||||||| || Sbjct 15074 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCATTTTGAATGTTGTAGTCAGAC 15015 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||| | ||| |||||||| | |||| | ||| | ||| ||| Sbjct 15014 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTAGTCAGGAGGA 14955 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||||||||| || || ||| ||||||| ||||||| ||||| || | Sbjct 14954 ATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGAAC 14895 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | || ||| | || ||||||| || || |||||||| ||||| || Sbjct 14894 TCGAGAGTGATGATCTTCCCTGTCACGGTCTTCACAAAAATCTGCATCTT 14845 >seq512960 Length=5958 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCT 15195 |||||| | | ||| || || | ||||| ||||| || ||||| |||||||| || Sbjct 4555 GCCACCACGAAGTCTCAACACAAGATGAAAAGTGGACTCCTTTTGAATGTTGTAGTCAGA 4496 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 | | | | | |||| | ||| |||||||| | |||| | ||| ||||| || Sbjct 4495 CAAAGTACGTCCATCTTGCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAAGAGG 4436 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||||||| || | || ||| ||||||| ||||||||||||| | || Sbjct 4435 AATTCCTTCCTTATTCTGGATCTTGGCCTTTACATTTTCTATGGTATCTGAGGGCTTGAC 4376 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | || ||||| || || |||||||| || |||||||| ||||| || Sbjct 4375 CTCGAGAGTGATGGTCTTCCCCGTCAGAGTCTTCACAAAAATCTGCATCTT 4325 >seq13283 Length=25003 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCT 15195 |||||| | | ||| || || | ||||| ||||| || ||||| |||||||| || Sbjct 7250 GCCACCACGAAGTCTCAACACAAGATGAAAAGTGGACTCCTTTTGAATGTTGTAGTCAGA 7191 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 | | | | | |||| | ||| |||||||| | |||| | ||| ||||| || Sbjct 7190 CAAAGTACGTCCATCTTGCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAAGAGG 7131 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||||||| || | || ||| ||||||| ||||||||||||| | || Sbjct 7130 AATTCCTTCCTTATTCTGGATCTTGGCCTTTACATTTTCTATGGTATCTGAGGGCTTGAC 7071 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | || ||||| || || |||||||| || |||||||| ||||| || Sbjct 7070 CTCGAGAGTGATGGTCTTCCCCGTCAGAGTCTTCACAAAAATCTGCATCTT 7020 >seq2656 Length=305558 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 ||| || |||| |||||| ||||| || ||||| || ||||| || | | | | | Sbjct 78840 TCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATATTGTAGTCAGACAAAGTACATCC 78781 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 ||||||| ||| |||||||| | |||| | ||| ||||| ||||||||||| || Sbjct 78780 ATCTTCTAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTT 78721 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 || | ||| ||||||| ||||||| ||||| || || || | || || Sbjct 78720 ATCCTGGGTCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACCTCAAGAGTGAT 78661 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 ||| || || |||| || || |||||||| ||||| || Sbjct 78660 GGTCTTCCCCATCAGGGTCTTCACAAAAATCTGCATCTT 78622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359914006444557