Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq512035 84.2 1e-11 seq254035 84.2 1e-11 seq222581 84.2 1e-11 seq222580 84.2 1e-11 seq11657 84.2 1e-11 seq5257 84.2 1e-11 seq4622 84.2 1e-11 seq8048 82.4 4e-11 seq3169 82.4 4e-11 >seq512035 Length=3400 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 2585 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 2644 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 2645 CTGAGCTAACCGGCC 2659 >seq254035 Length=275 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 175 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 116 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 115 CTGAGCTAACCGGCC 101 >seq222581 Length=261 Score = 84.2 bits (92), Expect = 1e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 99 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 158 Query 11528 CCGTC 11532 || || Sbjct 159 CCCTC 163 >seq222580 Length=261 Score = 84.2 bits (92), Expect = 1e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 99 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 158 Query 11528 CCGTC 11532 || || Sbjct 159 CCCTC 163 >seq11657 Length=338821 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 203349 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 203290 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 203289 CTGAGCTAACCGGCC 203275 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 45885 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 45944 Query 11528 CC 11529 || Sbjct 45945 CC 45946 >seq5257 Length=177491 Score = 84.2 bits (92), Expect = 1e-11 Identities = 73/90 (81%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 || ||||| ||| | |||||| | |||||||||| ||||||| |||||||||||| Sbjct 27838 AAAAAAAACCCAACTCTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCA 27779 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 | ||||||| |||||||||||||| |||| Sbjct 27778 CCACGCTCTAACCAACTGAGCTAACCGGCC 27749 >seq4622 Length=626524 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 9191 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 9250 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 9251 CTGAGCTAACCGGCC 9265 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 197630 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 197571 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 197570 CTGAGCTAACCGGCC 197556 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 184327 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 184268 Query 11528 CC 11529 || Sbjct 184267 CC 184266 >seq8048 Length=42129 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 41278 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 41337 Query 11528 CC 11529 || Sbjct 41338 CC 41339 >seq3169 Length=148348 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 112087 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 112028 Query 11528 CC 11529 || Sbjct 112027 CC 112026 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 133002 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 133061 Query 11528 CC 11529 || Sbjct 133062 CC 133063 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 259855743902452