Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq12033 170 3e-37 seq4687 109 8e-19 >seq12033 Length=514483 Score = 170 bits (188), Expect = 3e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| || || || | |||||||||||| ||| |||| || ||||| |||||| Sbjct 405016 GTCTGGAACAACTGCTCATCGCCCCATTCTGGATGCTCTTGTTTAAGCACATCACACACT 404957 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||||||||||| ||||| || || ||||||||||| |||||||||||||| ||||| Sbjct 404956 CTGTTGTGTTCCCGCAGCCAAATGGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 404897 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || ||||| | || | ||| || | | || || |||||||| | Sbjct 404896 ACCTCCTGGCCCACAGCAAACTTCAAGTGTTCAGGAATATGAGGCGGGTAGATCATTTCG 404837 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 ||||| ||||||||| | ||| |||||||| || || | ||| |||| Sbjct 404836 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATTAATCATCT 404788 Score = 107 bits (118), Expect = 3e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 ||| |||||||| | ||| |||||||| || || ||||| | ||||| ||| | || Sbjct 403858 TCTCACCCCATGGTTCTTTCCCTTAGTGAAAGCTGGTCCTCGTTCAAAATCTGTCTTGAA 403799 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 ||| || || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 403798 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 403739 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 10186 ||| |||| | || | ||||| ||||| |||||| Sbjct 403738 AGGAATGAACTTTCTTCTTAGAAGTACTTTTTTCACAAC 403700 Score = 87.8 bits (96), Expect = 3e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | || ||||| || || | ||| || ||||| ||| || | | Sbjct 403024 TCACCTTTCACACCCATGGGTGTTGGGCAGTCATCAGGCACAGGAGGAAGAGCTCTGGTG 402965 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 |||||||| || || || || |||||||||||| || ||||| | | ||||| | Sbjct 402964 TAATAGGACAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCTGTAGTGCACATTGTAAGTT 402905 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || || || |||||||||| ||||| ||||| Sbjct 402904 GGCGGACTCTCAATCAAATGTGATCTCGCTGAA 402872 Score = 86.0 bits (94), Expect = 9e-12 Identities = 179/264 (68%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | |||||| ||||| | ||||| ||||| || | ||| || ||||| || | Sbjct 405612 CTTACCCTGCCAGCAATTTGCCTGGTGAATGATTCAACAAACTGAGTGATGCCATGTTCC 405553 Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATGTAGTCATACTTTGTTTTATCAATCTCA 9441 | | || || ||||| || | || | |||| |||| |||||||| | Sbjct 405552 AGTAAGATAGAGTTGTTATAGATAAACTGCTGATAGTTGTACTCCTGGCCATCAATCTGA 405493 Query 9442 AACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGA 9501 || | || |||| || | ||||||||| || | |||||||||| | | ||||| Sbjct 405492 AAGACGTCAGGCAGAAGGGGATGCCAGTGGTAGAGTGTGTTAAACTCAGCAGCGATACGG 405433 Query 9502 TTTTGGTACTGGAAC-GAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGTG 9560 ||||||||||||||| | | ||| ||||| || || | |||| ||| | ||||| Sbjct 405432 TTTTGGTACTGGAACTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAATTTGAAGTG 405374 Query 9561 GTAGCCGCTGAGCTGCTGAACATA 9584 ||||| || | ||||| || || Sbjct 405373 ATAGCCACTCAAGTGCTGTACGTA 405350 >seq4687 Length=166797 Score = 109 bits (120), Expect = 8e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||||| || ||||| || ||||| | |||||||| | || || |||||| ||| Sbjct 158862 AAGCCCACCTCACCGCCAAATGTGCTCGCCTTCCAGTACTCGGGAGAACAGATGGGATTC 158921 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | |||||| || ||||| || |||||||||| || | || ||||| || |||||| Sbjct 158922 CCTAAGAGGCCCTTAAGGGAGAAAGGAGCCCCCATTTCTATCATACTCTCCCCAAAGATG 158981 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | ||| ||| || ||| || | | | || | ||| || |||| ||| ||||||||| Sbjct 158982 GAGTTCGGATGGCACTTCTCAAGAAGCAGCCCCGGGTAGAATTCCAAAGCATCGATGTCT 159041 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || || || || | || || || || ||||| || |||| Sbjct 159042 CCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTCGCCTG 159084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 703979817108880