Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq11610 123 2e-23 seq311227 96.9 3e-15 seq2274 87.8 2e-12 >seq11610 Length=252271 Score = 123 bits (136), Expect = 2e-23 Identities = 170/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 94770 AATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGT 94829 || || | || ||||| ||||| |||| |||||||||| |||||| || || || | || Sbjct 43088 AACTTAAAACACCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTAGACTCTTTCTGGATGT 43147 Query 94830 TATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCT 94889 | || || || ||| ||| ||||||||||| || ||||||| || || |||| Sbjct 43148 TGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCT 43207 Query 94890 GATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAG 94949 | ||||| || || || || ||||| | || || |||||||| ||| |||||| Sbjct 43208 GGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAC 43267 Query 94950 CGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | |||||||| || || || | || ||||| ||||||||||| Sbjct 43268 TGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 43325 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | |||| ||||| ||| || || || || | ||| || || | Sbjct 43555 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 43614 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| ||||||||||| || ||||||| || || ||||| |||||||| Sbjct 43615 AGGGTGCGCCCATCTTCCAGCTGTTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGAGGG 43674 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || |||||||| || | || || ||||||| ||| |||||| | || || Sbjct 43675 ATGCCTTCTTTTTCTTGGATCTTCCCCTTGACATTCTCGATGGTGTCACTAGGCTCCACC 43734 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||||||||| ||||| || ||||| |||||||||||||| Sbjct 43735 TCCAGAGTGATGGTTTTACCAGTCAGGGTTTTTACAAAGATCTGCAT 43781 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | |||| ||||| ||| || || || || | ||| || || | Sbjct 43327 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 43386 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| ||||||||||| || ||||||| || || ||||| ||||| || Sbjct 43387 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGG 43446 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || |||||||| ||| |||||| | | || || Sbjct 43447 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 43506 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || | || ||||| ||||||||||| Sbjct 43507 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 43553 >seq311227 Length=303 Score = 96.9 bits (106), Expect = 3e-15 Identities = 165/238 (69%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 94756 TAACGGTTTTTTAAAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAG 94814 ||| |||||| |||| ||| || ||||||||||| || || || || || | ||| Sbjct 238 TAAGGGTTTTCACAAATATTTGCATTCCTCCTCTCAGTCTTAATACTAAATGGAGTGTAC 179 Query 94815 ATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAA 94874 ||| ||||| | || || ||||||| || | ||| || | |||||| || ||| Sbjct 178 TTTCTTTTTGGATATTGTAGTCGCTCAGTGTTCTTCCATCTTCTAACTGTTTACCAGCAA 119 Query 94875 AGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGG 94934 | ||||| | |||||||||||| ||||| ||||| || || | || ||||| || || Sbjct 118 ATATTAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCTTGGATCTTTGCTTTCACAT 59 Query 94935 CGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTT 94992 | | ||||| | | || || || | || || |||||||| || | |||||| Sbjct 58 TCTCTATTGTGTCTGATGGTTCTACTTCCAAGGTTATTGTTTTTCCGGTCAAAGTTTT 1 >seq2274 Length=301413 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || |||||| | || | ||| || |||||||| | ||| || || || ||| | Sbjct 270444 TCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCC 270503 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||| || || || |||||| | ||||||||| || |||||||| |||||||| Sbjct 270504 ATCTTCCAGTTGCTTGCCAGGAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCTTT 270563 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| || | | || || | | | ||| || | ||||| Sbjct 270564 ATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCTAGGGCTTGACCTCGAGAGTGAT 270623 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| || || || |||||||| |||||||| Sbjct 270624 GGTTTTCTTCGTCAGGGTCTTCACAAAAATCTGCAT 270659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445415540835720