Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1287 118 1e-21 seq16876 105 7e-18 seq4890 95.1 1e-14 seq197 82.4 8e-11 >seq1287 Length=97560 Score = 118 bits (130), Expect = 1e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 || || ||||| ||||||| | | | ||| ||| ||| ||||||||| ||||| | Sbjct 71662 AGCTCCTCTTCGGTTTCAAACTGAGCCAGAACAGCTTCCAGTGAAGTACAGAATGTCTGA 71721 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | ||||||||| ||| ||| ||||| ||||| ||||| || ||| | |||||||||||| Sbjct 71722 CTGAATGTCCAACTTTCTGAGTCTTCCGAAAAATAAAAACACTTAGACCCAAATCCAATC 71781 Query 130773 CATCCCTTTGGGCAAGTAACATA 130795 ||||| |||||||| || ||||| Sbjct 71782 CATCCTTTTGGGCAGGTGACATA 71804 >seq16876 Length=156314 Score = 105 bits (116), Expect = 7e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 || || || || ||||||| | | | ||| ||| || |||||||||| ||||| | Sbjct 91422 AGCTCCTCGTCGGTTTCAAACTGAGCCAGAACAGCTTCCCATGAAGTACAGAATGTCTGA 91363 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | |||||||| || ||| ||||| ||||| ||||| || ||| ||||||||||||| Sbjct 91362 CTGAATGTCCAGTTCCTTGTGTCTTCCGAAAAATAAAAACACTTAGGTCCAAATCCAATC 91303 Query 130773 CATCCCTTTGGGCAAGTAACATA 130795 ||||| |||||||| || ||||| Sbjct 91302 CATCCTTTTGGGCAGGTGACATA 91280 >seq4890 Length=280387 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 ||||||||| |||||||| | ||| ||||||||| ||| || ||||| | | | Sbjct 141516 TTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCTGCCATAACTGCAAAACG 141457 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 ||||| || ||||| ||| || || |||||||| || || || || || || ||| Sbjct 141456 CTGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAGGAAATGTTTTC 141397 Query 21247 CATAAAATCAAATGGATTTTCAGATTTAAA 21276 |||||||||||| |||||||| | || ||| Sbjct 141396 CATAAAATCAAAGGGATTTTCTGCTTGAAA 141367 >seq197 Length=217379 Score = 82.4 bits (90), Expect = 8e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 21168 ttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTC 21227 ||||||| | |||||| | ||||| || | ||||| || || || || || ||||| | Sbjct 123088 TTGACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCC 123029 Query 21228 CTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTC 21267 | |||| ||| ||| ||||||||| |||||||||||||| Sbjct 123028 CCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTC 122989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 528488809289480