Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq52311 226 4e-54 seq8207 134 2e-26 seq197 129 7e-25 seq4890 107 2e-18 seq297100 84.2 3e-11 >seq52311 Length=1231 Score = 226 bits (250), Expect = 4e-54 Identities = 624/949 (66%), Gaps = 18/949 (2%) Strand=Plus/Minus Query 62889 AAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATC 62948 || || || ||||| | |||||| || |||| |||| || | | |||||| ||| Sbjct 1185 AATGCTACTGATGCTAAATTACATACTGCTATTTCATCTTTATTTGTAAATTGTACTATT 1126 Query 62949 TCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA 63008 ||| || | |||||| | || || ||||||||||||| ||||||||| ||| ||| Sbjct 1125 TCACAACATAAATTACTTGATTTTATTGTTCCTAAATTTTTTTGATTACTTTTTGCATTA 1066 Query 63009 CACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 63068 || ||||| ||||| | || |||| || || ||||| || || |||| || || || Sbjct 1065 CATGCATCTTTATATAACATATATGGTGTTCCTGTTTCTATTTGTGATTGTAATATTGCA 1006 Query 63069 TTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGT-ATAGTGT 63127 ||| | | | || | || | ||| || | || || |||| | ||| ||| Sbjct 1005 AACCATAATTTTTGTGC---TGGTACTGTTTTACGTCCCATTCCTTTTTCTTCATATTGT 949 Query 63128 --ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA 63185 ||| ||| || || || |||||||| || | | ||||| ||||||||| ||| Sbjct 948 TCATATAATTTATCAAATTCTTCTCCCCATACTTCATATAATCCTCTACATTCATCTGGA 889 Query 63186 CACATCAACGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCA 63244 ||||| || | ||| | | | | |||| |||| ||||||||| | ||| || ||||| Sbjct 888 CACATTAATGTCCATTGTTTAT-TTGCTTCTACTCTTTTCATAAATAAATCTGGTATCCA 830 Query 63245 AAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATC 63304 | || ||||| |||||| | ||| || || | || ||| ||| | | ||| Sbjct 829 TAATGCATAAAATAAATCTCTTGCTCTTAAATCTTCATGACCATGATTTTTTCTTAAATC 770 Query 63305 GAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63364 | | | ||||| | |||||| ||||| || ||||| || || | | || Sbjct 769 TAAAAGTTTAAATATATCTGCATGCCATGGTTCTAAATATATTGC---AAATGAA--CCC 715 Query 63365 TTTGTTT-----CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 63419 ||| ||| ||||| || |||| || | || || |||| | | | | |||||| Sbjct 714 TTTCTTTTTCCACCTCCTTGGTCTACATACTTTGCAGTTGAATTAAATATTTTTAACATT 655 Query 63420 GGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATA 63479 || | || || || ||||| ||||| || || ||||| |||||| || | ||| Sbjct 654 GGTACTATTCCATTAGATATTCCATTAGTTCCTCTAATATATGATCCACTTGCTCTAATT 595 Query 63480 TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 63539 ||| ||| |||| || ||||| ||||| ||| || ||||| ||| ||||||| Sbjct 594 TTATGAATAGATAATCCAATTCCTCCTGCACACTTACTTATAAATGCACATTGTTTTAAT 535 Query 63540 GTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATT 63599 || || | || || |||| |||||| ||| | | || |||||| |||||| Sbjct 534 GTTGCAAATATTCCTTCTAATGAATCATCTTGCATATCTAATAAAAAACATGATGACATT 475 Query 63600 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63659 || || | || || | ||||||||| || || | || || ||||| || ||| | Sbjct 474 TGTGGATTTTTTGTACCAGAATTAAATAATGTTGGTGTTGCATGTGTAAAATATCTTTGA 415 Query 63660 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 63719 | || ||| || || | || | | |||| || | ||| ||||| || Sbjct 414 CTCATTAAATTATATGTTTGTATTGTTTTTTCTAAATTTCCACAATGTATTCCACATGAT 355 Query 63720 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAG 63779 || | ||||||||| || || |||||||| | || || |||| | | || || || Sbjct 354 ACTCTCATTAACATATGTTGTGGTCTTTCTGCTATTTTTCCATTTACTCTTAATAAATAT 295 Query 63780 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 63828 ||| |||| || |||||||| |||||||| | ||| ||| |||| || Sbjct 294 GATCTTTCTAATGTTTTAAATCCAAAATAATCATATTGAAAATCTCTTT 246 >seq8207 Length=439286 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 388244 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 388185 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 |||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 388184 GACTCATTATTTCCCAGTATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 388125 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 388124 CTGTTTCTTATACCATA 388108 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||| ||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 377335 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 377276 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 || || || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 377275 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 377216 Query 63332 CGGTTCCAAGTATATGGC 63349 ||||||| ||| || || Sbjct 377215 AGGTTCCAGGTAAATAGC 377198 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634 |||| || || ||||| || | || || || || ||||| || || || || || || | Sbjct 383750 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 383691 Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 62694 ||||||||||||| ||||||| |||||| | || || || | || ||||| || | Sbjct 383690 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGT 383631 Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62754 | | | |||||||| || || || | ||||| || ||||| || || || | ||| | Sbjct 383630 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGC 383571 Query 62755 TCTTATTAGA 62764 ||||| || Sbjct 383570 GTTTATTCGA 383561 >seq197 Length=217379 Score = 129 bits (142), Expect = 7e-25 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| ||||| ||||| |||||||||||||| || ||||| || || || || | Sbjct 121521 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 121462 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || |||||||||||||| ||||| ||||| ||||||| Sbjct 121461 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGG 121402 Query 33446 C 33446 | Sbjct 121401 C 121401 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||||||| |||||||| || | |||||||||||||| ||||| |||||||| ||||| Sbjct 119557 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 119498 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 || || || || |||||||| | || ||||||||||| |||||| | ||| || || Sbjct 119497 AATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCTTGGCTAAACCGCTC 119438 Query 33684 CGCC 33687 | || Sbjct 119437 CACC 119434 >seq4890 Length=280387 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || ||||| || || || || |||||||| |||||||| ||||| || || | || || Sbjct 127883 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 127824 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 ||||| ||||| | ||| || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 127823 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 127765 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 33801 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATA 33860 ||| ||||| ||||||| || ||||||| ||| | ||||||||| |||||||||||| Sbjct 118602 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCTTGTTTATACATTTTCCAGATGTCAGG 118543 Query 33861 ATATTGGATTGGGAAAATAACAAATC 33886 || |||||||| || || ||||||| Sbjct 118542 GTACTGGATTGGAAAGATGACAAATC 118517 Score = 82.4 bits (90), Expect = 9e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 |||||||||||||||| ||||| ||||||||||||||||| || || | || |||| Sbjct 123295 CCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGATAA 123236 Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTAC 33803 |||| || || |||| | | || || ||||| | | | ||| || |||| ||| || Sbjct 123235 AATACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGAAGATCCTTTGATAAATCAAC 123178 >seq297100 Length=295 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33523 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCG 33582 || |||||||| || |||| | |||| ||||| |||||| | |||| | || Sbjct 55 ATTGTTTCTATTGCCATAAACAATCTCATTTTCTCATTTTCATCTTTTATATAATTCTCT 114 Query 33583 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 33642 ||||| | |||||| | || |||||||||||||| | || || |||||| ||||||| Sbjct 115 ATCAATAAACTATATGTCTCAGAATGAATGTTTTCCACTGCGATTTGAAATGAGTAGAAA 174 Query 33643 CATCT-AGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCAC 33701 | ||| ||| || | || || || ||| || |||| || |||||||| || Sbjct 175 C-TCTGAGCTTCAGGAACCTTCACATCTCTAAGAAATTTGAGTGCTAAATTTTCCAAAAC 233 Query 33702 TATTCCGTCACTG 33714 |||||||||||| Sbjct 234 AATTCCGTCACTG 246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618951172809320