Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq52311 149 2e-30 seq8207 96.9 9e-15 >seq52311 Length=1231 Score = 149 bits (164), Expect = 2e-30 Identities = 424/647 (66%), Gaps = 6/647 (1%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 || || || || || |||||| | | ||| |||| || |||||||| ||||| || Sbjct 425 TTTACACATGCAACACCAACATTATTTAATTCTGGTACAAAAAATCCACAAATGTCATCA 484 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || ||| | || | ||| | || ||||| | || || || |||| ||| | || | Sbjct 485 TGTTTTTTATTAGATATGCAAGATGATTCATTAGAAGGAATATTTGCAACATTAAAACAA 544 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 ||||| |||| ||| |||||| |||||||| |||| || || || || | ||| Sbjct 545 TGTGCATTTATAAGTAAGTGTGCAGGAGGAATTGGATTATCTATTCATAAAATTAGAGCA 604 Query 363727 CA--GAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTT 363783 || || || ||| | || || | || ||| || ||||| | || || ||| | Sbjct 605 AGTGGATCA--TATATTAGAGGAACTAATGGAATA-TCTAATGGAATAGTACCAATGTTA 661 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCG 363843 | ||| | ||||| | ||| || ||||| || || ||||| | || || | Sbjct 662 AAAATATTTAATTCAACTGCAAAGTATGTAGACCAAGGAGGTGGAAAAAGAAAGGGTTCA 721 Query 363844 TTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA 363903 ||||| || ||| | || || ||||| ||||| ||| | || | || | | ||| Sbjct 722 TTTGCAATATATTTAGAACCATGGCATGCAGATATATTTAAACTTTTAGATTTAAGAAAA 781 Query 363904 AACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGAC 363963 || || | || || || | ||| | ||| | || |||||| | ||| | | || Sbjct 782 AATCATGGTCATGAAGATTTAAGAGCAAGAGATTTATTTTATGCATTATGGATACCAGAT 841 Query 363964 CATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGT 364023 |||||||| | || || ||| ||| | ||| || | | || ||| | |||||| Sbjct 842 TTATTTATGAAAAGAGTAGAAGCAAATAAACAATGGACATTAATGTGTCCAGATGAATGT 901 Query 364024 CCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCG 364083 ||| | | || |||||||| || || | || | |||| ||| | |||||| Sbjct 902 AGAGGATTATATGAAGTATGGGGAGAAGAATTTGATAAATTATATGAACAATATGAAGAA 961 Query 364084 GAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCG 364143 | |||| || ||||| ||| | || ||||| || |||||||||| || | | || Sbjct 962 AAAGGAATGGGACGTAAAACAGTACCAGCACAAAAATTATGGTTTGCAATATTACAATCA 1021 Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAA 364190 || || || ||||||||||| |||||||| || |||||| | || || Sbjct 1022 CAAATAGAAACAGGAACACCATATATGTTATATAAAGATGCATGTAA 1068 >seq8207 Length=439286 Score = 96.9 bits (106), Expect = 9e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| |||||||| || || || ||| Sbjct 380415 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCTCAGACAGAGACAGGCACCCCGTACATG 380474 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| |||||||||| || | || || || | Sbjct 380475 CTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCAGAACTTGGGAACCATCAAATGC 380534 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| ||||| || || | || || ||| Sbjct 380535 AGCAACCTGTGTACAGAAATAGTGGAGTATACC 380567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1294783945404414