Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq311227 100 2e-16 seq11610 87.8 2e-12 seq52311 84.2 2e-11 seq17057 84.2 2e-11 >seq311227 Length=303 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 24006 AAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC-GACACCATCGAGCA 24064 ||||| || || |||||| | || ||| | ||||| || ||| | ||||| || ||| | Sbjct 1 AAAACTTTGACCGGAAAAACAATAACCTTGGAAGTAGAA-CCATCAGACACAATAGAGAA 59 Query 24065 AGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTA 24124 || ||| |||||| || || ||||| || || || ||||| || | | || | Sbjct 60 TGTGAAAGCAAAGATCCAAGATAAGGAAGGAATTCCACCAGATCAGCAACGTTTAATATT 119 Query 24125 CGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATC 24184 | || || || | ||||||| |||| | ||||| || || || ||||||||| Sbjct 120 TGCTGGTAAACAGTTAGAAGATGGAAGAACACTGAGCGACTACAATATCCAAAAAGAAAG 179 Query 24185 TACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||| | |||||||| |||||| ||||||||||| Sbjct 180 TACACTCCATTTAGTATTAAGACTGAGAGGAGGA 213 >seq11610 Length=252271 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||||||||| | ||||| ||| | || || | || || ||| | | Sbjct 43782 AATGCAGATCTTTGTAAAAACCCTGACTGGTAAAACCATCACTCTGGAGGTGGAGCCTAG 43723 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||||||| | ||||| ||||| || ||||||||||| ||||| || || Sbjct 43722 TGACACCATCGAGAATGTCAAGGGGAAGATCCAAGAAAAAGAAGGCATCCCTCCAGACCA 43663 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||||| |||| | | ||||| || || ||||||| Sbjct 43662 GCAGAGGTTGATCTTTGCAGGCAAACAGCTGGAAGATG 43625 >seq52311 Length=1231 Score = 84.2 bits (92), Expect = 2e-11 Identities = 179/264 (68%), Gaps = 5/264 (2%) Strand=Plus/Minus Query 133009 TTCGTATAATCGCTCAAATTCTTCGCCATAGCAGTCGTTCAAACCGGGACACTCGTCAGG 133068 ||| |||||| ||||||||||| || | || | || || ||| || || || Sbjct 949 TTCATATAATTTATCAAATTCTTCTCCCCATACTTCATATAATCCTCTACATTCATCTGG 890 Query 133069 ACACATCAATGACCATTTTTCTCCTGCGCTCACCCTTTTCATGAACAACGAAGGTGTCCA 133128 |||||| |||| ||||| || ||| || |||||||| || || ||| |||| Sbjct 889 ACACATTAATGTCCATTGTTTATTTGCTTCTACTCTTTTCATAAATAAATCTGGTATCCA 830 Query 133129 CATGGCAAAAAATAAATCGCGAGCCTTCATATCTTCCGCGCCCAT-ATTTCGTTTCAAGT 133187 | ||| |||||||||| | || | | |||||| | |||| |||| | | || | Sbjct 829 TAATGCATAAAATAAATCTCTTGCTCTTAAATCTTCAT-GACCATGATTTTTTCTTAAAT 771 Query 133188 CCaaaaaagtaaaaaTGTCTGCATGCCAAGGCTCGATATATACGGCCAAAGCGCCTTTCC 133247 | |||| |||| || ||||||||||| || || | ||||| || || | || || | Sbjct 770 CTAAAAGTTTAAATATATCTGCATGCCATGGTTCTAAATATATTGCAAATGAACCCTTTC 711 Query 133248 TTTT---ACCTCCCTGATCCACAT 133268 |||| |||||| || || |||| Sbjct 710 TTTTTCCACCTCCTTGGTCTACAT 687 >seq17057 Length=148899 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 |||||||||| | || || || || | || || || | || ||| | || || ||| | Sbjct 116991 CAAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCC 117050 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || |||||||||||| | || || ||||| || || |||||||| || || || Sbjct 117051 CAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGA 117110 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||| | || || | | ||||||||| || ||||||| | | | | ||||| Sbjct 117111 CCAGCAGCGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTA 117170 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| || ||||| ||||| Sbjct 117171 CAACATCCAGAAAGAGTCTAC 117191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427247032062435