Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq454007 140 2e-28 seq427667 140 2e-28 seq236557 122 6e-23 seq187 122 6e-23 seq25349 118 7e-22 seq198 109 4e-19 seq1304 104 2e-17 seq2656 96.9 2e-15 seq2312 96.9 2e-15 seq2274 89.7 3e-13 seq474452 87.8 1e-12 seq48630 87.8 1e-12 seq164 87.8 1e-12 seq101 87.8 1e-12 seq8727 82.4 5e-11 >seq454007 Length=529 Score = 140 bits (154), Expect = 2e-28 Identities = 77/77 (100%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 514 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 455 Query 20007 GGTAATATTTAGCCTTA 20023 ||||||||||||||||| Sbjct 454 GGTAATATTTAGCCTTA 438 >seq427667 Length=440 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 221 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGCGGGAATCTCGT 280 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 281 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 315 >seq236557 Length=267 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| |||| || |||||||| Sbjct 215 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGCAGGGACAGTGGGAATCTCGT 156 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 155 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 121 >seq187 Length=229634 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||||||||| || |||||| | Sbjct 161353 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGATAGGGACAGTGGGAATCTCAT 161412 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| ||||||||||||||||||||| Sbjct 161413 TCATCCATTCATGTGCGTCACTAATTAGATGACGA 161447 >seq25349 Length=3084 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||| | Sbjct 1789 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCCT 1730 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||||| |||||||||||||||||| Sbjct 1729 TCATCCATTCATGCGCATCACTAATTAGATGACGA 1695 >seq198 Length=88056 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||| |||||||||||||||||||||| | |||||||| ||||| || |||||||| Sbjct 83308 AAGCTCGTTCCCTTGGCTGTGGTTTCGTTGGATAGTAGGTAGGGACAGTGGCAATCTCGT 83249 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||| ||||||||||||||||||| || Sbjct 83248 TCATCCATTCATTCGCGTCACTAATTAGATGAGGA 83214 >seq1304 Length=380674 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 351320 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 351261 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 351260 GCCGGTATTTAGCCTTA 351244 >seq2656 Length=305558 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| |||||||||||||||||| ||||||||| || | | || Sbjct 78837 CAACACTAGATGAAGAGTGGACTCCTTTTGAATATTGTAGTCAGACAAAGTACATCCATC 78778 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 |||| ||| || || ||||| || || | ||| || || | || | ||||| || || Sbjct 78777 TTCTAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATC 78718 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | | || ||| ||||| | | ||||| || || || | || || || Sbjct 78717 CTGGGTCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACCTCAAGAGTGATGGT 78658 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||| ||| ||| ||||| || |||||||| || Sbjct 78657 CTTCCCCATCAGGGTCTTCACAAAAATCTGCATCTT 78622 >seq2312 Length=925560 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| |||||||||||| ||||| ||||||||| |||| | || Sbjct 16630 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 16571 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || || || || || | ||| || | || || | ||||| || || Sbjct 16570 TTCCAGTTGCTTGCCAGCTAAGATCAGTCTTTGCTGGTAAGAAGGAATTCCTTCCTTATC 16511 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | ||||| ||| ||||| | ||||| || || || | || || || Sbjct 16510 CTGGATTTTGGCCTTTACATTTTCTGTTGTATCCGAGGGCTCCACCTCGAGAGTGATGGT 16451 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || |||| ||| |||||||| |||||||| || Sbjct 16450 CTTCCCTGTCAGGGTCTTCACGAAAATCTGCATCTT 16415 >seq2274 Length=301413 Score = 89.7 bits (98), Expect = 3e-13 Identities = 153/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| |||||||||||| ||||| ||||||||| | || | || Sbjct 270447 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATC 270506 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || | ||| || || | ||| || || | || | |||||||| || Sbjct 270507 TTCCAGTTGCTTGCCAGGAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCTTTATC 270566 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCA---CTTTCAACTTCTAATGTAAT 38281 | || || ||| ||||| | | ||||| | | ||| || || | || || Sbjct 270567 CTGGATCTTGGCCTTTACATTTTCTATTGTATC-CTAGGGCTT--GACCTCGAGAGTGAT 270623 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||||| ||||| ||| ||||| || |||||||| || Sbjct 270624 GGTTTTCTTCGTCAGGGTCTTCACAAAAATCTGCATCTT 270662 >seq474452 Length=663 Score = 87.8 bits (96), Expect = 1e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19948 TCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCG 20007 |||||||||||||||||||||||||||| || |||||||||||| |||||||||| | Sbjct 464 TCTCTCTTCAAAGTTCTTTTCAACTTTCTCTTACGGTACTTGTTGAAGATCGGTCTCGTG 405 Query 20008 GTAATATTTAGCCTTA 20023 |||||||||||| Sbjct 404 CCGGTATTTAGCCTTA 389 >seq48630 Length=936 Score = 87.8 bits (96), Expect = 1e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 19954 TTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATA 20013 |||||||| ||||||| | |||||||||||||||| ||||||||||||||| | | || Sbjct 76 TTCAAAGTCCTTTTCATCCTTCCCTCACGGTACTTCTTCGCTATCGGTCTCACACCAGTA 17 Query 20014 TTTAGCCTTAT 20024 ||||||||||| Sbjct 16 TTTAGCCTTAT 6 >seq164 Length=654742 Score = 87.8 bits (96), Expect = 1e-12 Identities = 75/93 (81%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956 ||||| ||||||||||||||||||| | | |||||||| ||| | || ||||| | Sbjct 359762 AAGCCTGTTCCCTTGGCTGTGGTTTTGATGGATAGTAGGTAGAGACAGTGGGTATCTCTT 359703 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| |||||| | ||||||||||||||||| Sbjct 359702 TCATCCATTCATGTGAGTCACTAATTAGATGAC 359670 >seq101 Length=221765 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| |||||||||||| ||||| ||||||||| || | | || Sbjct 70593 CAACACTAGATGAAGAGTGGGCTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATC 70652 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| || || | || | ||||| || || Sbjct 70653 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATCCCTTCCTTATC 70712 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | ||||| ||||| | | | || || Sbjct 70713 CTGGATCTTGGCCTTTACATTTTCTTTTGTATCCAAGGGCTCAACCTTGAGAATGATGGT 70772 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||| ||| ||| |||||||| |||||||| || Sbjct 70773 CTTCCCCATCAGGGTCTTCACGAAAATCTGCATCTT 70808 >seq8727 Length=492672 Score = 82.4 bits (90), Expect = 5e-11 Identities = 76/95 (80%), Gaps = 6/95 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| |||||||||||||||||||| || |||||||| ||||| || ||||| || Sbjct 18620 AAGCCTGTTCCCTTGGCTGTGGTTTC-CTGGATAGTAGGTAGGGACAATGGGAATCTGGT 18678 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||| || ||| |||||| |||| || Sbjct 18679 TCATCCATTCATATGCATCAGTAATTACATGATGA 18713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 332852324759087