Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq52311 232 8e-56 seq8207 134 2e-26 seq197 123 3e-23 seq4890 102 1e-16 seq297100 89.7 6e-13 >seq52311 Length=1231 Score = 232 bits (256), Expect = 8e-56 Identities = 625/949 (66%), Gaps = 18/949 (2%) Strand=Plus/Minus Query 62744 AATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATC 62803 ||||| || ||||| | |||||| || |||| |||| || | | |||||| ||| Sbjct 1185 AATGCTACTGATGCTAAATTACATACTGCTATTTCATCTTTATTTGTAAATTGTACTATT 1126 Query 62804 TCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA 62863 ||| || | |||||| | || || ||||||||||||| ||||||||| ||| ||| Sbjct 1125 TCACAACATAAATTACTTGATTTTATTGTTCCTAAATTTTTTTGATTACTTTTTGCATTA 1066 Query 62864 CACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 62923 || ||||| ||||| | || |||| || || ||||| || || |||| || || || Sbjct 1065 CATGCATCTTTATATAACATATATGGTGTTCCTGTTTCTATTTGTGATTGTAATATTGCA 1006 Query 62924 TTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGT-ATAGTGT 62982 ||| | | | || | || | ||| || | || || |||| | ||| ||| Sbjct 1005 AACCATAATTTTTGTGC---TGGTACTGTTTTACGTCCCATTCCTTTTTCTTCATATTGT 949 Query 62983 --ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGA 63040 ||| ||| || || || |||||||| || | | | ||| ||||||||| ||| Sbjct 948 TCATATAATTTATCAAATTCTTCTCCCCATACTTCATATAATCCTCTACATTCATCTGGA 889 Query 63041 CACATCAACGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCA 63099 ||||| || | ||| | | | | |||| |||| ||||||||| | ||| || ||||| Sbjct 888 CACATTAATGTCCATTGTTTAT-TTGCTTCTACTCTTTTCATAAATAAATCTGGTATCCA 830 Query 63100 AAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATC 63159 | || ||||| |||||| | ||| || || | || ||| ||| | | ||| Sbjct 829 TAATGCATAAAATAAATCTCTTGCTCTTAAATCTTCATGACCATGATTTTTTCTTAAATC 770 Query 63160 GAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63219 | | | ||||| | |||||| ||||| || ||||| || || | | || Sbjct 769 TAAAAGTTTAAATATATCTGCATGCCATGGTTCTAAATATATTGC---AAATGAA--CCC 715 Query 63220 TTTGTTT-----CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 63274 ||| ||| ||||| || |||| || | || || |||| | | | | |||||| Sbjct 714 TTTCTTTTTCCACCTCCTTGGTCTACATACTTTGCAGTTGAATTAAATATTTTTAACATT 655 Query 63275 GGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATA 63334 || | || ||||| ||| | ||||| || ||| ||||| |||||| || | ||| Sbjct 654 GGTACTATTCCATTAGATATTCCATTAGTTCCTCTAATATATGATCCACTTGCTCTAATT 595 Query 63335 TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 63394 ||| ||| |||| || ||||| ||||| ||| || ||||| ||| ||||||| Sbjct 594 TTATGAATAGATAATCCAATTCCTCCTGCACACTTACTTATAAATGCACATTGTTTTAAT 535 Query 63395 GTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATT 63454 || || | || || |||| |||||| ||| | | || |||||| |||||| Sbjct 534 GTTGCAAATATTCCTTCTAATGAATCATCTTGCATATCTAATAAAAAACATGATGACATT 475 Query 63455 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCA 63514 || || | || || | ||||||||| || || | || || ||||| || ||| | Sbjct 474 TGTGGATTTTTTGTACCAGAATTAAATAATGTTGGTGTTGCATGTGTAAAATATCTTTGA 415 Query 63515 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 63574 | || ||| || || | || | | |||| || | ||| ||||| || Sbjct 414 CTCATTAAATTATATGTTTGTATTGTTTTTTCTAAATTTCCACAATGTATTCCACATGAT 355 Query 63575 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAG 63634 || | ||||||||| || || |||||||| | || || |||| | | || || || Sbjct 354 ACTCTCATTAACATATGTTGTGGTCTTTCTGCTATTTTTCCATTTACTCTTAATAAATAT 295 Query 63635 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 63683 ||| |||| || |||||||| |||||||| | ||| ||| |||| || Sbjct 294 GATCTTTCTAATGTTTTAAATCCAAAATAATCATATTGAAAATCTCTTT 246 >seq8207 Length=439286 Score = 134 bits (148), Expect = 2e-26 Identities = 112/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 388244 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 388185 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 |||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 388184 GACTCATTATTTCCCAGTATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 388125 Query 62312 CTATTTCTAAGACCGTA 62328 || ||||| | ||| || Sbjct 388124 CTGTTTCTTATACCATA 388108 Score = 105 bits (116), Expect = 8e-18 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| |||| ||| || ||||||||||| | || || ||||| ||||| || || || | Sbjct 363040 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATTCTTGCTGCCAGGA 362981 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || || || | ||||| | || || ||| | || || |||| ||| |||| Sbjct 362980 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTATCCA 362921 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 362920 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 362875 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||| ||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 377335 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 377276 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 || || || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 377275 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 377216 Query 63187 CGGTTCCAAGTATATGGC 63204 ||||||| ||| || || Sbjct 377215 AGGTTCCAGGTAAATAGC 377198 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 62430 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62489 |||| || || ||||| || | || || || || ||||| || || || || || || | Sbjct 383750 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 383691 Query 62490 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGAT 62549 ||||||||||||| ||||||| |||||| | || || || | || ||||| || | Sbjct 383690 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGT 383631 Query 62550 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62609 | | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 383630 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGC 383571 Query 62610 TCTTATTAGA 62619 ||||| || Sbjct 383570 GTTTATTCGA 383561 >seq197 Length=217379 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||||||||| ||||| | ||| |||||||||||||| || ||||| || || || || | Sbjct 121521 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 121462 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| ||||| || ||||| || ||||||||||| || ||||| ||||| ||||||| Sbjct 121461 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGG 121402 Query 32803 C 32803 | Sbjct 121401 C 121401 Score = 105 bits (116), Expect = 8e-18 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||||| || |||||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 119557 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 119498 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCT 33026 ||||| || || ||||| || | || ||||||||||| |||||| Sbjct 119497 AATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCT 119452 >seq4890 Length=280387 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 32685 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 32744 || ||||| || || | || |||||||| |||||||| ||||| || || | || || Sbjct 127883 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 127824 Query 32745 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 32803 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 127823 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 127765 Score = 86.0 bits (94), Expect = 8e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 33159 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 33218 || ||||| ||||||| || ||||||| ||| | ||||||||| |||||||||||| | Sbjct 118601 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCTTGTTTATACATTTTCCAGATGTCAGGG 118542 Query 33219 TATTGAATTGGAAAAATAACAAATC 33243 || || |||||||| || ||||||| Sbjct 118541 TACTGGATTGGAAAGATGACAAATC 118517 >seq297100 Length=295 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 32880 ATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCA 32939 ||||| ||||| || |||| | |||| ||||| |||||| | ||| | || Sbjct 55 ATTGTTTCTATTGCCATAAACAATCTCATTTTCTCATTTTCATCTTTTATATAATTCTCT 114 Query 32940 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAG 32999 ||||| | |||||| | || |||||||||||||| | || ||||||||| |||||| Sbjct 115 ATCAATAAACTATATGTCTCAGAATGAATGTTTTCCACTGCGATTTGAAATGAGTAGAAA 174 Query 33000 CATCT-AGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCAC 33058 | ||| ||| || | || || || ||| || |||| |||||||||||| || Sbjct 175 C-TCTGAGCTTCAGGAACCTTCACATCTCTAAGAAATTTGAGTGCTAAATTTTCCAAAAC 233 Query 33059 TATTCCGTCACTG 33071 |||||||||||| Sbjct 234 AATTCCGTCACTG 246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629567432889200