Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq311227 125 6e-24 seq17057 125 6e-24 seq11610 107 2e-18 seq2656 96.9 3e-15 seq332959 91.5 1e-13 >seq311227 Length=303 Score = 125 bits (138), Expect = 6e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 25014 AAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCA 25073 || ||||||||||| ||| | || || | ||||| || | || ||||| || ||| Sbjct 1 AAAACTTTGACCGGAAAAACAATAACCTTGGAAGTAGAACCATCAGACACAATAGAGAAT 60 Query 25074 CTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTT 25133 |||| ||| ||| || || ||||| |||||||| || || || || | || ||| Sbjct 61 GTGAAAGCAAAGATCCAAGATAAGGAAGGAATTCCACCAGATCAGCAACGTTTAATATTT 120 Query 25134 GCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCC 25193 || || ||||| |||||||||| | || || |||| |||||||| ||||||||| Sbjct 121 GCTGGTAAACAGTTAGAAGATGGAAGAACACTGAGCGACTACAATATCCAAAAAGAAAGT 180 Query 25194 ACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || |||||||| |||| || |||||||||| Sbjct 181 ACACTCCATTTAGTATTAAGACTGAGAGGAGGAA 214 >seq17057 Length=148899 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| ||||||| || ||||||| | || |||||| | Sbjct 116994 AATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 117053 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| |||||| ||||| || ||| || || ||||| ||||| |||||||| Sbjct 117054 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCA 117113 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || ||||||||||| || | ||||||| |||||| | |||||||| Sbjct 117114 GCAGCGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 117173 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 || || ||||| || || || || Sbjct 117174 CATCCAGAAAGAGTCTACCCTGCA 117197 >seq11610 Length=252271 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||||||| ||||||| | || |||||| | | Sbjct 43553 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 43494 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| || || || || || ||||| Sbjct 43493 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 43434 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| || ||||| | ||||||| ||||| || || ||||| Sbjct 43433 CAGAGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 43374 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||| ||||| || || | || || | || ||||| || Sbjct 43373 ATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGG 43327 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||||||| ||||||| | || |||||| | | Sbjct 43325 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 43266 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | ||| || ||| ||||| || || || || || ||||| Sbjct 43265 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 43206 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| || ||||| | ||||||| ||||| || || ||||| Sbjct 43205 CAGAGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 43146 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| || || || || || || || Sbjct 43145 ATCCAGAAAGAGTCTACTCTGCACTTGGTCCT 43114 >seq2656 Length=305558 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||| || || ||||||| | || || ||| | || Sbjct 78625 ATGCAGATTTTTGTGAAGACCCTGATGGGGAAGACCATCACTCTTGAGGTCGAGCCCTCG 78684 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || || | ||| || | | || || ||||| ||||| |||||||| Sbjct 78685 GATACAATAGAAAATGTAAAGGCCAAGACCCAGGATAAGGAAGGAATTCCTCCTGACCAG 78744 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | || ||||| ||||| ||| ||||||||| | ||| || || |||||| Sbjct 78745 CAAAGACTGATCTTTGCTGGCAAGCAACTAGAAGATGGATGTACTTTGTCTGACTACAAT 78804 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 |||||||| || ||||| || ||| ||||| | || || Sbjct 78805 ATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 78842 >seq332959 Length=315 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 25047 GTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATT 25106 |||||| | |||||| |||||| ||||| || ||| || || ||||| ||| Sbjct 313 GTGGAGCCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATT 254 Query 25107 CCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTG 25166 || |||||||| |||||| | || ||||||||||| || | ||||||| |||||| | Sbjct 253 CCCCCTGACCAGCAGCGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTT 194 Query 25167 GGCGATTACAATATTCAAAAAGAATCCACGCTACA 25201 |||||||| || || ||||| || || || || Sbjct 193 TCTGATTACAACATCCAGAAAGAGTCGACCCTGCA 159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430617817325255