Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq311227 113 4e-20 seq11610 113 4e-20 seq17057 98.7 8e-16 seq512960 86.0 5e-12 seq13283 86.0 5e-12 seq2312 86.0 5e-12 seq59220 84.2 2e-11 seq6593 82.4 6e-11 >seq311227 Length=303 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 22234 AAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGAT 22293 |||||||| ||||| ||||| | || | ||||| ||| | | || || | || || Sbjct 1 AAAACTTTGACCGGAAAAACAATAACCTTGGAAGTAGAACCATCAGACACAATAGAGAAT 60 Query 22294 ATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTT 22353 | ||| ||| || ||||| ||||| || |||||||| ||||| |||||| | |||||| Sbjct 61 GTGAAAGCAAAGATCCAAGATAAGGAAGGAATTCCACCAGATCAGCAACGTTTAATATTT 120 Query 22354 GCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCC 22413 || || ||||||||||| ||| | || | ||| ||||| || ||||||||| Sbjct 121 GCTGGTAAACAGTTAGAAGATGGAAGAACACTGAGCGACTACAATATCCAAAAAGAAAGT 180 Query 22414 ACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || | |||||||| || || || | ||||| Sbjct 181 ACACTCCATTTAGTATTAAGACTGAGAGGAGG 212 >seq11610 Length=252271 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || || |||||||| || |||| || || ||||| ||| Sbjct 43326 GATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 43267 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || |||| || || |||||||||||||| || || || || || Sbjct 43266 TGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 43207 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || ||||| || |||||| | || ||| |||||| | || || ||||| Sbjct 43206 GCAGAGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 43147 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 ||| || ||||| || || | || || || |||| ||| | |||||| || Sbjct 43146 CATCCAGAAAGAGTCTACTCTGCACTTGGTCCTGCGCTTGAGGGGAGGTGTT 43095 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || || |||||||| || |||| || || ||||| ||| Sbjct 43554 GATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 43495 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || |||| || || |||||||||||||| || || || || || Sbjct 43494 TGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 43435 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || ||||| || |||||| | || ||| |||||| | || || ||||| Sbjct 43434 GCAGAGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 43375 Query 22398 CATTCAAAAAGAATCCAC 22415 ||| || ||||| ||||| Sbjct 43374 CATCCAGAAAGAGTCCAC 43357 >seq17057 Length=148899 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || |||||||| || || || || | ||||| || || |||| || || ||||| Sbjct 116989 GTCAAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAG 117048 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| || ||| | || | | || || || || || ||||| || ||||| || Sbjct 117049 CCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCT 117108 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || || || || ||||||||||| ||| | || ||| |||||| | || ||| Sbjct 117109 GACCAGCAGCGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAT 117168 Query 22393 TACAACATTCAAAAAGAATCCACC 22416 |||||||| || ||||| || ||| Sbjct 117169 TACAACATCCAGAAAGAGTCTACC 117192 >seq512960 Length=5958 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| |||||||| || ||| | || || || || ||||||| || || | || Sbjct 4325 AAGATGCAGATTTTTGTGAAGACTCTGACGGGGAAGACCATCACTCTCGAGGTCAAGCCC 4384 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | |||||| | || || | || || || || | ||||| || ||||| | || Sbjct 4385 TCAGATACCATAGAAAATGTAAAGGCCAAGATCCAGAATAAGGAAGGAATTCCTCTTGAC 4444 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || ||| | || || ||||| ||||| || | | ||| || || | || || ||| Sbjct 4445 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGCAAGATGGACGTACTTTGTCTGACTAC 4504 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||||||||| || ||||| | ||| | || ||| || | || || || Sbjct 4505 AACATTCAAAAGGAGTCCACTTTTCATCTTGTGTTGAGACTTCGTGGTGG 4554 >seq13283 Length=25003 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| |||||||| || ||| | || || || || ||||||| || || | || Sbjct 7020 AAGATGCAGATTTTTGTGAAGACTCTGACGGGGAAGACCATCACTCTCGAGGTCAAGCCC 7079 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | |||||| | || || | || || || || | ||||| || ||||| | || Sbjct 7080 TCAGATACCATAGAAAATGTAAAGGCCAAGATCCAGAATAAGGAAGGAATTCCTCTTGAC 7139 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || ||| | || || ||||| ||||| || | | ||| || || | || || ||| Sbjct 7140 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGCAAGATGGACGTACTTTGTCTGACTAC 7199 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||||||||| || ||||| | ||| | || ||| || | || || || Sbjct 7200 AACATTCAAAAGGAGTCCACTTTTCATCTTGTGTTGAGACTTCGTGGTGG 7249 >seq2312 Length=925560 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| || || || | || || || || ||||||| || ||||| || Sbjct 16415 AAGATGCAGATTTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTCGAGGTGGAGCCC 16474 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| || || | || ||||| || || ||||| || ||||| | | Sbjct 16475 TCGGATACAACAGAAAATGTAAAGGCCAAAATCCAGGATAAGGAAGGAATTCCTTCTTAC 16534 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || ||| | || || || || ||||| || | || ||| || || | || || ||| Sbjct 16535 CAGCAAAGACTGATCTTAGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 16594 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||||||||| || ||||| | ||| |||| ||| || | || || || Sbjct 16595 AACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACTTCGTGGTGG 16644 >seq59220 Length=24887 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| |||||||| || || | || || || | ||||||| || | || || Sbjct 14845 AAGATGCAGATTTTTGTGAAGACCGTGACAGGGAAGATCATCACTCTCGAGTTCGAGCCC 14904 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || | || || || || || || || || ||||| || || Sbjct 14905 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGAC 14964 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 | ||| | || || ||||| ||||| || | || ||| || || | || || ||| Sbjct 14965 TAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 15024 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||| || ||||| | ||| |||| ||| || | || || ||| Sbjct 15025 AACATTCAAAATGAGTCCACTCTTCATCTAGTGTTGAGACTTCGTGGTGGT 15075 >seq6593 Length=173140 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || | | | || || || | || ||||| || || ||| Sbjct 88596 AGATGCAGATCTTTGTGAAGATCCTGATGGGCAAGACCATTACCCTTGAGGTCGAGCCCA 88537 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| || || ||||| ||||| |||||||||||||| ||||| || || | Sbjct 88536 GTGACACCACTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATTCCGCCTGACC 88477 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 ||| ||||| || || | |||| ||| | ||| || | |||| || || |||| Sbjct 88476 GACAGCGTCTGATTTTCACAGGCATGCAGCTGGAGAATGGCTGCACTCCGTCAGACTACA 88417 Query 22397 ACATTCAAAAAGAATCCACC 22416 | || || ||||| |||||| Sbjct 88416 ATATCCAGAAAGAGTCCACC 88397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417102876413005