Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq17057 172 1e-37 seq11610 170 4e-37 seq311227 154 3e-32 seq332959 134 3e-26 seq34337 114 2e-20 seq6593 107 4e-18 seq2274 107 4e-18 seq18533 93.3 8e-14 >seq17057 Length=148899 Score = 172 bits (190), Expect = 1e-37 Identities = 166/213 (78%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || |||||||| |||||||| ||||| || || || | |||||||| Sbjct 117203 ACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 117144 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| ||||| || ||||| | || ||||| || |||||||||||||| || || Sbjct 117143 AGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 117084 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||| ||| |||||||||||| | || || |||| ||||||||| || Sbjct 117083 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 117024 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || || |||||||| ||||| || |||||| || Sbjct 117023 CCGGTCAGGGTCTTCACGAAGATTTGCATTTTG 116991 >seq11610 Length=252271 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | | ||||| |||||||| || || |||||||| |||||||| || || || Sbjct 43099 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAC 43158 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||| | ||| ||||| || || || | || || ||||| || || Sbjct 43159 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGG 43218 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||| ||||| |||||||| |||||||||||| | || || Sbjct 43219 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 43278 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| || || || | |||||| ||||| |||||||| Sbjct 43279 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 43325 Score = 168 bits (186), Expect = 1e-36 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | |||| ||| || ||||||||||| |||||||| || || || || || | | Sbjct 43336 AGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGC 43395 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||| ||||| || || || | || || ||||| || || ||||| ||| Sbjct 43396 CCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCC 43455 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||| ||||| |||||||| |||||||||||| | || || |||| |||| Sbjct 43456 TTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 43515 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || | |||||| ||||| |||||||| Sbjct 43516 ATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 43553 Score = 152 bits (168), Expect = 9e-32 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | |||| ||| || ||||||||||| |||||||| || || || || || | | Sbjct 43564 AGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGC 43623 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||| || || || || || | || || ||||| || || |||||||| Sbjct 43624 CCATCTTCCAGCTGTTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCTTCT 43683 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || ||||| ||||| ||||||| |||||||||||| | || || |||| ||| Sbjct 43684 TTTTCTTGGATCTTCCCCTTGACATTCTCGATGGTGTCACTAGGCTCCACCTCCAGAGTG 43743 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||||||| || || ||||| || || || ||||||||| Sbjct 43744 ATGGTTTTACCAGTCAGGGTTTTTACAAAGATCTGCATT 43782 >seq311227 Length=303 Score = 154 bits (170), Expect = 3e-32 Identities = 157/205 (77%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| | || | ||||| || || || || ||||||||||| || || ||| Sbjct 214 TTCCTCCTCTCAGTCTTAATACTAAATGGAGTGTACTTTCTTTTTGGATATTGTAGTCGC 155 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 ||||| || |||||||||||||| || || || ||||| | | ||| || || |||| Sbjct 154 TCAGTGTTCTTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGCTGATCTGGTG 95 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| |||||||| ||||| |||||||| || || ||| || ||||||| || ||||| Sbjct 94 GAATTCCTTCCTTATCTTGGATCTTTGCTTTCACATTCTCTATTGTGTCTGATGGTTCTA 35 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGT 68437 |||||||||| || |||||||| || Sbjct 34 CTTCCAAGGTTATTGTTTTTCCGGT 10 >seq332959 Length=315 Score = 134 bits (148), Expect = 3e-26 Identities = 119/149 (80%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || |||||||| |||||||| ||||| || || || | |||||||| Sbjct 153 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 212 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| ||||| || ||||| | || ||||| || |||||||||||||| || || Sbjct 213 AGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 272 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTC 68401 ||||| ||||| ||| |||||||||||| Sbjct 273 ATCTTGGCCTTCACGTTCTCGATGGTGTC 301 Score = 105 bits (116), Expect = 1e-17 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 68331 ATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCC 68390 ||||| | || ||||| || |||||||||||||| || || ||||| ||||| ||| | Sbjct 3 ATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 62 Query 68391 TCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACG 68450 ||||||||||| | || || |||| |||||||| || || || |||||||| ||| Sbjct 63 TCGATGGTGTCACTGGGCTCCACCTCCAGCGTGATGGTCTTGCCGGTCAGGGTCTTCACG 122 Query 68451 AATATCTGCAT 68461 || |||||||| Sbjct 123 AAGATCTGCAT 133 >seq34337 Length=37708 Score = 114 bits (126), Expect = 2e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || |||||||| |||||||| ||||| || || || | |||||||| Sbjct 141 ACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 82 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || ||||| | || ||||| || |||||||||||||| || || Sbjct 81 AGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 22 Query 68373 ATCTTTGCCTTGACGGCCTCG 68393 ||||| ||||| ||| |||| Sbjct 21 ATCTTGGCCTTCACGTTCTCG 1 >seq6593 Length=173140 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | ||| ||| || ||||||||||| ||||| || || || || Sbjct 88368 CCACCTCGCAGACGAAGCACCGTGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGAC 88427 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||| || | |||| | || | ||| || || | ||| |||| || ||| Sbjct 88428 GGAGTGCAGCCATTCTCCAGCTGCATGCCTGTGAAAATCAGACGCTGTCGGTCAGGCGGA 88487 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||| || || || ||||| ||| ||||||| | || || Sbjct 88488 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGACC 88547 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| ||||| || ||| | ||| |||| || || |||||||| Sbjct 88548 TCAAGGGTAATGGTCTTGCCCATCAGGATCTTCACAAAGATCTGCAT 88594 >seq2274 Length=301413 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| | ||| || | || || |||||||| ||||| ||||| || || || Sbjct 270433 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 270492 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || |||||||| | ||||| || | || || |||||||| ||||| || ||| Sbjct 270493 AAAGTATGTCCATCTTCCAGTTGCTTGCCAGGAAAGATCAGTCTTTGCTGGTCAGGAGGA 270552 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| || || || ||||| ||||| || || || || || | | || Sbjct 270553 ATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCTAGGGCTTGACC 270612 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||||| ||| |||||||| || || |||||||| Sbjct 270613 TCGAGAGTGATGGTTTTCTTCGTCAGGGTCTTCACAAAAATCTGCAT 270659 >seq18533 Length=223514 Score = 93.3 bits (102), Expect = 8e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||||| ||| ||||||||||| ||||| || || || || || | |||| || Sbjct 51679 ACCAAGTATAGGGTGGACTCTTTCTGGATATTGTATTCTGACAGATTGTGGCCATTCTCC 51738 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || || ||| || || || ||| | || ||||| | ||| ||| ||||||| Sbjct 51739 AGCTGTTTGCCAATGAAAATCAGACTCTGTAGATCAGGTGGGAAGCCCTCCCTGTCTTGG 51798 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || || ||||| ||| | ||||| | || || || ||||| |||| || Sbjct 51799 ATTTTGGCTTTGACATTCTCAGTAGTGTCACTGGGCTCAACCTCACAGGTGGTGGTCTTC 51858 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || ||||| || || || |||||||| Sbjct 51859 CCTGTTAGGGTTTTCACAAAGATCTGCAT 51887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915710457270440