Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq59220 109 5e-19 seq512960 107 2e-18 seq13283 107 2e-18 seq2274 105 6e-18 seq311227 100 2e-16 seq17057 98.7 8e-16 seq2656 98.7 8e-16 seq2312 95.1 1e-14 seq11610 89.7 4e-13 seq101 86.0 5e-12 >seq59220 Length=24887 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| |||| ||| | || || || |||||||||||||| || Sbjct 15075 ACCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCATTTTGAATGTTGTAGTCAGA 15016 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| ||||| || ||||| |||| || | || | ||| ||||| Sbjct 15015 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTAGTCAGGAGG 14956 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| |||||||| || ||||| |||| | ||| | || || | || |||| Sbjct 14955 AATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGAA 14896 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | | || || |||| || || |||||||||||||| Sbjct 14895 CTCGAGAGTGATGATCTTCCCTGTCACGGTCTTCACAAAAATCTGCAT 14848 >seq512960 Length=5958 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| |||||||| || | ||| | || || || |||||||||||||| || | Sbjct 4554 CCACCACGAAGTCTCAACACAAGATGAAAAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 4495 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | |||||| ||||| ||||| || ||||| |||| || | || ||||| ||||| Sbjct 4494 AAAGTACGTCCATCTTGCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAAGAGGA 4435 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || ||||| || | ||||| |||| | ||| | ||| || | || | ||| Sbjct 4434 ATTCCTTCCTTATTCTGGATCTTGGCCTTTACATTTTCTATGGTATCTGAGGGCTTGACC 4375 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || |||||||| || |||||||||||||| Sbjct 4374 TCGAGAGTGATGGTCTTCCCCGTCAGAGTCTTCACAAAAATCTGCAT 4328 >seq13283 Length=25003 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| |||||||| || | ||| | || || || |||||||||||||| || | Sbjct 7249 CCACCACGAAGTCTCAACACAAGATGAAAAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 7190 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | |||||| ||||| ||||| || ||||| |||| || | || ||||| ||||| Sbjct 7189 AAAGTACGTCCATCTTGCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAAGAGGA 7130 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || ||||| || | ||||| |||| | ||| | ||| || | || | ||| Sbjct 7129 ATTCCTTCCTTATTCTGGATCTTGGCCTTTACATTTTCTATGGTATCTGAGGGCTTGACC 7070 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || |||||||| || |||||||||||||| Sbjct 7069 TCGAGAGTGATGGTCTTCCCCGTCAGAGTCTTCACAAAAATCTGCAT 7023 >seq2274 Length=301413 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| |||| ||| | || || || |||||||||||||| || Sbjct 270432 ACCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 270491 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||| | |||||| ||||| || |||| |||| || | || ||||| ||||| Sbjct 270492 CAAAGTATGTCCATCTTCCAGTTGCTTGCCAGGAAAGATCAGTCTTTGCTGGTCAGGAGG 270551 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| |||||||| || ||||| |||| | ||| | || || || | ||| Sbjct 270552 AATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCTAGGGCTTGAC 270611 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | ||||| ||||| || || |||||||||||||| Sbjct 270612 CTCGAGAGTGATGGTTTTCTTCGTCAGGGTCTTCACAAAAATCTGCAT 270659 >seq311227 Length=303 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 ||||| || |||||||| | ||| ||||||||| || ||||| ||||||| || | Sbjct 203 AGTCTTAATACTAAATGGAGTGTACTTTCTTTTTGGATATTGTAGTCGCTCAGTGTTCTT 144 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 |||||| | ||||||||||| | || | ||| || || || || ||||| ||||| Sbjct 143 CCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGCTGATCTGGTGGAATTCCTTCC 84 Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344 || || |||||| ||| | | || | ||||| | | ||| || |||| ||| Sbjct 83 TTATCTTGGATCTTTGCTTTCACATTCTCTATTGTGTCTGATGGTTCTACTTCCAAGGTT 24 Query 114345 ACCGTTTTGCCGGTCAGAGTTTT 114367 | ||||| ||||||| |||||| Sbjct 23 ATTGTTTTTCCGGTCAAAGTTTT 1 >seq17057 Length=148899 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| ||||| || ||||||||||| | ||| || |||||| || || || || Sbjct 117191 GTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 117132 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| ||||| ||||| || ||||||||||| || || ||||| || Sbjct 117131 GCAAAGATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 117072 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| ||| || || |||| ||| | || ||||||||||| || Sbjct 117071 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 117012 Query 114366 TTTACAAAAATCTGCAT 114382 || || || || ||||| Sbjct 117011 TTCACGAAGATTTGCAT 116995 >seq2656 Length=305558 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||| | |||||||| |||| ||| | || || || |||||||| ||||| || | Sbjct 78851 CCACCATGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATATTGTAGTCAGAC 78792 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | ||||| |||||| ||||| || ||||| |||| || | || ||||| |||||| Sbjct 78791 AAAGTACATCCATCTTCTAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 78732 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || ||||| || || |||| |||| | ||| | || || | || ||||| Sbjct 78731 ATTCCTTCCTTATCCTGGGTCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACC 78672 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || |||| || || |||||||||||||| Sbjct 78671 TCAAGAGTGATGGTCTTCCCCATCAGGGTCTTCACAAAAATCTGCAT 78625 >seq2312 Length=925560 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| |||||||| |||| ||| | || || || |||||||||||||| || | Sbjct 16644 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 16585 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | |||||| |||||| ||||| || ||||| |||| || | || |||| | |||| Sbjct 16584 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCTAAGATCAGTCTTTGCTGGTAAGAAGGA 16525 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || ||||| || || || || |||| | ||| || || | || || || Sbjct 16524 ATTCCTTCCTTATCCTGGATTTTGGCCTTTACATTTTCTGTTGTATCCGAGGGCTCCACC 16465 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || ||||| || || || ||||||||||| Sbjct 16464 TCGAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 16418 >seq11610 Length=252271 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| || || || || |||||| || ||||| || Sbjct 43585 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCT 43644 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| ||||| ||||| ||||||||||| || ||||| || Sbjct 43645 GCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCTTCTTTTTCTTGGATCTTCCCCTTG 43704 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | | || || |||| || | ||||| || ||||| ||| Sbjct 43705 ACATTCTCGATGGTGTCACTAGGCTCCACCTCCAGAGTGATGGTTTTACCAGTCAGGGTT 43764 Query 114366 TTTACAAAAATCTGCAT 114382 |||||||| |||||||| Sbjct 43765 TTTACAAAGATCTGCAT 43781 >seq101 Length=221765 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||| | |||||||| |||| ||| | || | || |||||||||||||| || Sbjct 70578 ACCACCATGAAGTCTCAACACTAGATGAAGAGTGGGCTCCTTTTGAATGTTGTAGTCAGA 70637 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||||| |||||| ||||| || ||||| |||| || | || ||||| ||||| Sbjct 70638 CAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 70697 Query 114275 AATGCCTTCTTTGTC 114289 ||| ||||| || || Sbjct 70698 AATCCCTTCCTTATC 70712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417506734647324