Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2312 141 2e-28 seq311227 123 6e-23 seq512960 122 2e-22 seq13283 122 2e-22 seq59220 118 2e-21 seq17057 118 2e-21 seq2274 109 1e-18 seq101 105 2e-17 seq332959 96.9 8e-15 >seq2312 Length=925560 Score = 141 bits (156), Expect = 2e-28 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 16644 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 16585 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363 | || ||||| ||||| | ||| || || || |||||||| | |||| | |||| Sbjct 16584 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCTAAGATCAGTCTTTGCTGGTAAGAA--- 16528 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| |||||||||||||| || || || |||||| | | ||| | || Sbjct 16527 GGAATTCCTTCCTTATCCTGGATTTTGGCCTTTACATTTTCTGTTGTATCCGAGGGCTCC 16468 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| |||||||| ||||| ||||| ||||| |||||||| Sbjct 16467 ACCTCGAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 16418 >seq311227 Length=303 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 ||||| | ||| | ||| | || ||||||||||||||||| |||||| || || | | Sbjct 203 AGTCTTAATACTAAATGGAGTGTACTTTCTTTTTGGATATTGTAGTCGCTCAGTGTTCTT 144 Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCT 288375 || |||||||| ||||| || || || || | ||| || ||| ||| |||||||| Sbjct 143 CCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGCTGATCTGGTGGAATTCCTTCC 84 Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTG 288435 ||||| ||||| || |||||||| || ||||| | || | ||||||||| | || Sbjct 83 TTATCTTGGATCTTTGCTTTCACATTCTCTATTGTGTCTGATGGTTCTACTTCCAAGGTT 24 Query 288436 ATCGTCTTCCCGGTCAGAGTCTT 288458 || || || ||||||| ||| || Sbjct 23 ATTGTTTTTCCGGTCAAAGTTTT 1 >seq512960 Length=5958 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 4554 CCACCACGAAGTCTCAACACAAGATGAAAAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 4495 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| |||| | ||| || || || |||||||| | || || | || Sbjct 4494 AAAGTACGTCCATCTTGCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAAGAGGA 4435 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| |||| |||||| || || || || |||||||| | ||| | | || Sbjct 4434 ATTCCTTCCTTATTCTGGATCTTGGCCTTTACATTTTCTATGGTATCTGAGGGCTTGACC 4375 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| |||||||| ||||||||||| || || |||||||| Sbjct 4374 TCGAGAGTGATGGTCTTCCCCGTCAGAGTCTTCACAAAAATCTGCAT 4328 >seq13283 Length=25003 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 7249 CCACCACGAAGTCTCAACACAAGATGAAAAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 7190 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| |||| | ||| || || || |||||||| | || || | || Sbjct 7189 AAAGTACGTCCATCTTGCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAAGAGGA 7130 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| |||| |||||| || || || || |||||||| | ||| | | || Sbjct 7129 ATTCCTTCCTTATTCTGGATCTTGGCCTTTACATTTTCTATGGTATCTGAGGGCTTGACC 7070 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| |||||||| ||||||||||| || || |||||||| Sbjct 7069 TCGAGAGTGATGGTCTTCCCCGTCAGAGTCTTCACAAAAATCTGCAT 7023 >seq59220 Length=24887 Score = 118 bits (130), Expect = 2e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 15074 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCATTTTGAATGTTGTAGTCAGAC 15015 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363 | || ||||| ||||| | ||| || || || |||||||| | ||| | || | Sbjct 15014 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTAGTCAGGA--- 14958 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||||||||||||||| || || || || |||||||| | ||| | || Sbjct 14957 GGAATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCG 14898 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| ||||| ||||||| |||| ||||| || || |||||||| Sbjct 14897 AACTCGAGAGTGATGATCTTCCCTGTCACGGTCTTCACAAAAATCTGCAT 14848 >seq17057 Length=148899 Score = 118 bits (130), Expect = 2e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || ||||| || ||||| | || || || || ||| Sbjct 117185 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 117126 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || ||||| || | || || ||||| ||||||||||| || || |||||||| Sbjct 117125 ATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 117066 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| |||||||| ||||| ||| Sbjct 117065 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 117006 Query 288463 AATATCTGCATTATG 288477 || || |||||| || Sbjct 117005 AAGATTTGCATTTTG 116991 >seq2274 Length=301413 Score = 109 bits (120), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 270433 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 270492 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363 | || |||| ||||| | ||| || || | |||||||| | |||| | || | Sbjct 270493 AAAGTATGTCCATCTTCCAGTTGCTTGCCAGGAAAGATCAGTCTTTGCTGGTCAGGA--- 270549 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||||||||||||||| || || || || |||||||| | ||| | | Sbjct 270550 GGAATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCTAGGGCTTG 270609 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| || ||| ||||| ||||| || || |||||||| Sbjct 270610 ACCTCGAGAGTGATGGTTTTCTTCGTCAGGGTCTTCACAAAAATCTGCAT 270659 >seq101 Length=221765 Score = 105 bits (116), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 70579 CCACCATGAAGTCTCAACACTAGATGAAGAGTGGGCTCCTTTTGAATGTTGTAGTCAGAC 70638 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363 | || | ||| ||||| | ||| || || || |||||||| | |||| | || | Sbjct 70639 AAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGA--- 70695 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || ||||| ||||||||||| || || || || |||||| | | ||| | || Sbjct 70696 GGAATCCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTTTTGTATCCAAGGGCTCA 70755 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||| |||| |||||||| |||| ||||| ||||| |||||||| Sbjct 70756 ACCTTGAGAATGATGGTCTTCCCCATCAGGGTCTTCACGAAAATCTGCAT 70805 >seq332959 Length=315 Score = 96.9 bits (106), Expect = 8e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 288341 AGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGT 288400 |||| || ||||| || | || || ||||| ||||||||||| || || ||||||| Sbjct 1 AGATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGT 60 Query 288401 TTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460 | || || | || || | || || || |||||||| ||||| |||||||| ||||| | Sbjct 61 TCTCGATGGTGTCACTGGGCTCCACCTCCAGCGTGATGGTCTTGCCGGTCAGGGTCTTCA 120 Query 288461 CGAATATCTGCAT 288473 |||| |||||||| Sbjct 121 CGAAGATCTGCAT 133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1171898077579006