Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq17057 147 2e-30 seq11610 127 2e-24 seq2312 122 9e-23 seq59220 120 3e-22 seq332959 107 2e-18 seq2656 107 2e-18 seq2274 105 7e-18 seq512960 104 2e-17 seq13283 104 2e-17 seq34337 98.7 1e-15 seq101 98.7 1e-15 seq52311 82.4 8e-11 seq8567 82.4 8e-11 >seq17057 Length=148899 Score = 147 bits (162), Expect = 2e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | || || ||||| || ||||||||||| | | ||||| | || Sbjct 117207 AAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 117148 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||||||||||||| | ||||||||||||||||| || ||||| ||||| || || Sbjct 117147 TTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATC 117088 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| || ||| | || |||| || ||||| || | || | ||| Sbjct 117087 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 117028 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||||||||| || || ||||| ||||||||||| Sbjct 117027 CTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 116992 >seq11610 Length=252271 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | ||||||| | ||||| ||||| ||||| Sbjct 43585 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCT 43644 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | || ||||||||| ||||| || |||||||||||||| || || ||| Sbjct 43645 GCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCTTCTTTTTCTTGGATCTTCCCCTTG 43704 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| | ||||| || | ||| | ||| || || |||| ||| Sbjct 43705 ACATTCTCGATGGTGTCACTAGGCTCCACCTCCAGAGTGATGGTTTTACCAGTCAGGGTT 43764 Query 64427 TTTACGAAAATTTGCATT 64444 ||||| || || |||||| Sbjct 43765 TTTACAAAGATCTGCATT 43782 >seq2312 Length=925560 Score = 122 bits (134), Expect = 9e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | ||| | ||||||||||| || || || |||||||||||||| || | Sbjct 16644 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 16585 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | ||||| || |||||||| || | || || | ||||||| | |||| Sbjct 16584 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCTAAGATCAGTCTTTGCTGGTAAGAAGGA 16525 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 |||||||| || || || ||||| ||||||| || |||||| || ||||| Sbjct 16524 ATTCCTTCCTTATCCTGGATTTTGGCCTTTACATTTTCTGTTGTATCCGAGGGCTCCACC 16465 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | ||| | |||||| || |||| || || |||||||| ||||| || Sbjct 16464 TCGAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCATCTT 16415 >seq59220 Length=24887 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||||||||||| || || || |||||||||||||| || | Sbjct 15075 ACCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCATTTTGAATGTTGTAGTCAGA 15016 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| || |||||||| ||| | || || | |||| ||| ||||| Sbjct 15015 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTAGTCAGGAGG 14956 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||||||||| || || || || ||||||| || | |||||| || || | Sbjct 14955 AATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGAA 14896 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | ||| | | |||| || |||| || || || ||||| ||||| || Sbjct 14895 CTCGAGAGTGATGATCTTCCCTGTCACGGTCTTCACAAAAATCTGCATCTT 14845 >seq332959 Length=315 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| || ||||||||||| | | ||||| | ||||| |||||||||||| Sbjct 165 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 224 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||||||||||||| || ||||| ||||| || || || || || ||| Sbjct 225 GCAAAGATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 284 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCAC 64395 || ||| | || |||| || ||||| Sbjct 285 ACGTTCTCGATGGTGTCACTGGGCTCCAC 313 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 ||||||||||||||||| || ||||| ||||| || || || || || ||| || | Sbjct 3 ATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 62 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || |||| || ||||| || | || | |||||||||||||| || || ||| Sbjct 63 TCGATGGTGTCACTGGGCTCCACCTCCAGCGTGATGGTCTTGCCGGTCAGGGTCTTCACG 122 Query 64433 AAAATTTGCAT 64443 || || ||||| Sbjct 123 AAGATCTGCAT 133 >seq2656 Length=305558 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| | ||||||||||| || || || |||||||| ||||| || | | || | | Sbjct 78840 TCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATATTGTAGTCAGACAAAGTACATCC 78781 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| || |||||||| ||| | || || | |||||||| |||||||||||||| || Sbjct 78780 ATCTTCTAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTT 78721 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 || || | || ||||||| || | |||||| || || || || | ||| | Sbjct 78720 ATCCTGGGTCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACCTCAAGAGTGAT 78661 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||| || ||| || || || ||||| ||||| || Sbjct 78660 GGTCTTCCCCATCAGGGTCTTCACAAAAATCTGCATCTT 78622 >seq2274 Length=301413 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||||||||||| || || || |||||||||||||| || | Sbjct 270432 ACCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 270491 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || | | ||||| || |||||||| | | | || || | |||||||| ||||| Sbjct 270492 CAAAGTATGTCCATCTTCCAGTTGCTTGCCAGGAAAGATCAGTCTTTGCTGGTCAGGAGG 270551 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||||||||| || || || || ||||||| || | |||||| || | || Sbjct 270552 AATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCTAGGGCTTGAC 270611 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | ||| | ||| || |||| || || || ||||| ||||| || Sbjct 270612 CTCGAGAGTGATGGTTTTCTTCGTCAGGGTCTTCACAAAAATCTGCATCTT 270662 >seq512960 Length=5958 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | ||| | ||| ||||||| || || || |||||||||||||| || | Sbjct 4554 CCACCACGAAGTCTCAACACAAGATGAAAAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 4495 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | |||| || |||||||| ||| | || || | |||||||| ||||| Sbjct 4494 AAAGTACGTCCATCTTGCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAAGAGGA 4435 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 |||||||| || | || || || ||||||| || | ||||| || | || Sbjct 4434 ATTCCTTCCTTATTCTGGATCTTGGCCTTTACATTTTCTATGGTATCTGAGGGCTTGACC 4375 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | ||| | |||||| || |||| ||| || || ||||| ||||| || Sbjct 4374 TCGAGAGTGATGGTCTTCCCCGTCAGAGTCTTCACAAAAATCTGCATCTT 4325 >seq13283 Length=25003 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | ||| | ||| ||||||| || || || |||||||||||||| || | Sbjct 7249 CCACCACGAAGTCTCAACACAAGATGAAAAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 7190 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | |||| || |||||||| ||| | || || | |||||||| ||||| Sbjct 7189 AAAGTACGTCCATCTTGCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAAGAGGA 7130 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 |||||||| || | || || || ||||||| || | ||||| || | || Sbjct 7129 ATTCCTTCCTTATTCTGGATCTTGGCCTTTACATTTTCTATGGTATCTGAGGGCTTGACC 7070 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | ||| | |||||| || |||| ||| || || ||||| ||||| || Sbjct 7069 TCGAGAGTGATGGTCTTCCCCGTCAGAGTCTTCACAAAAATCTGCATCTT 7020 >seq34337 Length=37708 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | || || ||||| || ||||||||||| | | ||||| | || Sbjct 145 AAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 86 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||||||||| ||| | ||||||||||||||||| || ||||| ||||| || || Sbjct 85 TTCCAGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATC 26 Query 64351 TTGTATTTT 64359 || || || Sbjct 25 CTGGATCTT 17 >seq101 Length=221765 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| | ||||||||||| || | || |||||||||||||| || | | || | | Sbjct 70590 TCTCAACACTAGATGAAGAGTGGGCTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCC 70649 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| || |||||||| ||| | || || | |||||||| |||||||| ||||| || Sbjct 70650 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATCCCTTCCTT 70709 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 || || || || ||||||| || |||||| || || || | | | | | Sbjct 70710 ATCCTGGATCTTGGCCTTTACATTTTCTTTTGTATCCAAGGGCTCAACCTTGAGAATGAT 70769 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||| || ||| || || |||||||| ||||| || Sbjct 70770 GGTCTTCCCCATCAGGGTCTTCACGAAAATCTGCATCTT 70808 >seq52311 Length=1231 Score = 82.4 bits (90), Expect = 8e-11 Identities = 175/259 (68%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 154806 TCATATTGTTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAG 154865 ||||||||||| || | ||| ||||| ||| | | || || | || || ||| Sbjct 957 TCATATTGTTCATATAATTTATCAAATTCTTCTCCCCATACTTCATATAATCCTCTACAT 898 Query 154866 CGGTCGGGACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCC 154925 || |||||||| |||| ||| || ||| || ||| | ||||||||| ||||| Sbjct 897 TCATCTGGACACATTAATGTCCATTGTTTATTTGCTTCTACTCTTTTCATAAATAAATCT 838 Query 154926 GGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATG-TTTCG 154984 || | ||| || || || || ||||| | || || |||||| | ||||| ||| Sbjct 837 GGTATCCATAATGCATAAAATAAATCTCTTGCTCTTAAATCTTCA-TGACCATGATTTTT 779 Query 154985 CTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGC 155044 |||||| |||| | | |||| || || ||||| || |||||||||| || | | Sbjct 778 TCTTAAATCTAAAAGTTTAAATATATCTGCATGCCATGGTTCTAAATATATTGCAAATGA 719 Query 155045 GCCTTTGCGTTTTCCTCCT 155063 || || | |||||| ||| Sbjct 718 ACCCTTTCTTTTTCCACCT 700 >seq8567 Length=100185 Score = 82.4 bits (90), Expect = 8e-11 Identities = 134/193 (69%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 ||||||| ||||||| || | |||| | ||||| || |||||||| ||| | | Sbjct 93382 CTTTTTGCTTGTTGTAGTC----AAAGTGCATCCATCTTCCAGTTGCTTGCCAGCAAAGA 93437 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCT 64373 | || | ||||| ||||||||||||||||| || ||||| || || ||||||| | Sbjct 93438 TCAGTCTTTGCTGATCGGGAGGAATTCCTTCGTTATCTTGGATCTTGGCCTTTACATTTT 93497 Query 64374 CCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | | || ||| || | ||||| ||| | || ||| | |||| || || | || Sbjct 93498 CTATTGCATCTGAGGGTTTGACTTCAGGAGTGATGGACTTCCTTGTCAGGGTCTTCATGA 93557 Query 64434 AAATTTGCATTTT 64446 |||| ||||| || Sbjct 93558 AAATCTGCATCTT 93570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496439722255880