Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq11610 102 8e-17 seq512960 89.7 5e-13 seq13283 89.7 5e-13 seq2312 87.8 2e-12 seq2274 87.8 2e-12 seq8207 86.0 6e-12 seq59220 82.4 8e-11 >seq11610 Length=252271 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || ||||||||||| || || ||| || || || ||||| || | | Sbjct 43588 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCTGCA 43647 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | | ||| ||||| ||||| || |||||||| || ||| || || | Sbjct 43648 AAGATCAACCTCTGCTGGTCTGGAGGGATGCCTTCTTTTTCTTGGATCTTCCCCTTGACA 43707 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||||||||| | || | |||||||||||||| |||||| Sbjct 43708 TTCTCGATGGTGTCACTAGGCTCCACCTCCAGAGTGATGGTTTTACCAGTCAGGGTTTTT 43767 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 43768 ACAAAGATCTGCAT 43781 >seq512960 Length=5958 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||||||||||||||| || |||||| || | ||||| || || | | Sbjct 4521 GACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTGCAGTTGCTTGCCAGCA 4462 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | || ||||| |||| || ||||| || | ||| || |||| Sbjct 4461 AAGATCAGTCTTTGCTGGTCAAGAGGAATTCCTTCCTTATTCTGGATCTTGGCCTTTACA 4402 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | ||| || | | || ||||||| || | || || || |||||||| || Sbjct 4401 TTTTCTATGGTATCTGAGGGCTTGACCTCGAGAGTGATGGTCTTCCCCGTCAGAGTCTTC 4342 Query 138601 ACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 4341 ACAAAAATCTGCAT 4328 >seq13283 Length=25003 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||||||||||||||| || |||||| || | ||||| || || | | Sbjct 7216 GACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTGCAGTTGCTTGCCAGCA 7157 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | || ||||| |||| || ||||| || | ||| || |||| Sbjct 7156 AAGATCAGTCTTTGCTGGTCAAGAGGAATTCCTTCCTTATTCTGGATCTTGGCCTTTACA 7097 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | ||| || | | || ||||||| || | || || || |||||||| || Sbjct 7096 TTTTCTATGGTATCTGAGGGCTTGACCTCGAGAGTGATGGTCTTCCCCGTCAGAGTCTTC 7037 Query 138601 ACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 7036 ACAAAAATCTGCAT 7023 >seq2312 Length=925560 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| |||| ||| | | ||||||||||||||||||||||| || |||||| || Sbjct 16630 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 16571 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || ||||| || || | |||| || | || |||| | ||| || ||||| || || Sbjct 16570 TTCCAGTTGCTTGCCAGCTAAGATCAGTCTTTGCTGGTAAGAAGGAATTCCTTCCTTATC 16511 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 |||||| |||| | ||| || || | | ||||||||||| || | || Sbjct 16510 CTGGATTTTGGCCTTTACATTTTCTGTTGTATCCGAGGGCTCCACCTCGAGAGTGATGGT 16451 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || ||||| || || || ||||||||||| Sbjct 16450 CTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 16418 >seq2274 Length=301413 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| |||| ||| | | ||||||||||||||||||||||| || |||| | || Sbjct 270447 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATC 270506 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || ||||| || || | | |||| || | || ||||| ||||| || |||||||| || Sbjct 270507 TTCCAGTTGCTTGCCAGGAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCTTTATC 270566 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| || |||| | ||| | || || | || ||||||| || | || Sbjct 270567 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCTAGGGCTTGACCTCGAGAGTGATGGT 270626 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| ||||| || || |||||||||||||| Sbjct 270627 TTTCTTCGTCAGGGTCTTCACAAAAATCTGCAT 270659 >seq8207 Length=439286 Score = 86.0 bits (94), Expect = 6e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 153642 TACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTG 153701 |||| ||| || || | || |||||||||||||| ||| ||||| || ||||| ||| Sbjct 380563 TACTCCACTATTTCTGTACACAGGTTGCTGCATTTGATGGTTCCCAAGTTCTGCTGGTTG 380504 Query 153702 CTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 153751 || || ||||| || | |||||| ||||||||||||| ||| ||||| Sbjct 380503 CTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTGCCTGTCTC 380454 >seq59220 Length=24887 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| |||| ||| | | ||||| ||||||||||||||||| || |||||| || Sbjct 15060 CAACACTAGATGAAGAGTGGACTCATTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 15001 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || ||||| || || | | |||| || | || | ||| ||||| || |||||||| || Sbjct 15000 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTAGTCAGGAGGAATTCCTTCTTTATC 14941 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| || |||| | ||| | || || | | ||| | ||||| || | | Sbjct 14940 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGAACTCGAGAGTGATGAT 14881 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || |||| || || |||||||||||||| Sbjct 14880 CTTCCCTGTCACGGTCTTCACAAAAATCTGCAT 14848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493079019379440