Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq12033 158 2e-33 seq4687 111 2e-19 >seq12033 Length=514483 Score = 158 bits (174), Expect = 2e-33 Identities = 177/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 9726 GATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAG 9785 |||||| | | || || ||||||||||| || |||||||| || || || ||||| || Sbjct 405029 GATTAGCCTGCTTGTCTGGAACAACTGCTCATCGCCCCATTCTGGATGCTCTTGTTTAAG 404970 Query 9786 AACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGG 9845 ||||| || || ||||||||||| | |||||| ||||||||||||||||| | ||| || Sbjct 404969 CACATCACACACTCTGTTGTGTTCCCGCAGCCAAATGGTGGCGTACATCATCAGACCAGG 404910 Query 9846 CACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGC 9905 ||| | |||||| || || | ||||| ||||| || | || || | | |||| Sbjct 404909 CACCAGACCAAAGACCTCCTGGCCCACAGCAAACTTCAAGTGTTCAGGAATATGAGGCGG 404850 Query 9906 ATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 || | ||| | ||||| || |||||||| ||||| |||||||| || || | ||| Sbjct 404849 GTAGATCATTTCGACCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATTAAT 404793 Score = 96.9 bits (106), Expect = 5e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | || || ||||||||| ||| || ||||| |||| ||| || Sbjct 403024 TCACCTTTCACACCCATGGGTGTTGGGCAGTCATCAGGCACAGGAGGAAGAGCTCTGGTG 402965 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| || || ||||| ||||||||||| || |||| || | | ||||| Sbjct 402964 TAATAGGACAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCTGTAGTGCACATTGTAAGTT 402905 Query 10507 GGGGGACTGTCAATCA 10522 || ||||| ||||||| Sbjct 402904 GGCGGACTCTCAATCA 402889 Score = 95.1 bits (104), Expect = 2e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 ||| |||||||| | ||| | |||||||| |||||||| | | ||| ||| | || Sbjct 403858 TCTCACCCCATGGTTCTTTCCCTTAGTGAAAGCTGGTCCTCGTTCAAAATCTGTCTTGAA 403799 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 |||||| || || ||||| || | || || || ||||||| || |||||||||||||| Sbjct 403798 AAATTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 403739 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 || || || | || | | || ||||| | ||||| | | ||||||| || || Sbjct 403738 AGGAATGAACTTTCTTCTTAGAAGTACTTTTTTCACAACTTCTTTTGAATCAGGAAG 403682 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 9963 AACCTGATACTTCATCTTCCCATCCTTGAACAGACGCAGCTTATGCTGCTTCTCCAACGT 10022 ||||||||| ||||| || ||||||||||| || |||||||||||||| |||| || | Sbjct 404681 AACCTGATATTTCATTTTTCCATCCTTGAAAAGGCGCAGCTTATGCTGTCTCTCTAAAGA 404622 Query 10023 TTCGCCGTAGATGTGACTGAGATCGACCT 10051 ||| || || |||||||| | || |||| Sbjct 404621 TTCACCATAAATGTGACTTAAGTCCACCT 404593 >seq4687 Length=166797 Score = 111 bits (122), Expect = 2e-19 Identities = 175/248 (71%), Gaps = 2/248 (1%) Strand=Plus/Plus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || || | || || || || || ||||| || ||||| | ||||||||| Sbjct 158841 GTGGCCGTCTTAACAAGGTTGAAGCCCACCTCACCGCCAAATGTGCTCGCCTTCCAGTAC 158900 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 | || || |||||| ||| | | ||| || || | ||| || |||||||||| || Sbjct 158901 TCGGGAGAACAGATGGGATTCCCTAAGAGGCCCTTAAGGGAGAAAGGAGCCCCCATTTCT 158960 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCA-GTGTA 9111 || || ||||| || ||||||| ||| | || || | || | |||| | ||| Sbjct 158961 ATCATACTCTCCCCAAAGATGGAGTTCGGATGGCACTTCTCAA-GAAGCAGCCCCGGGTA 159019 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || ||| | ||| |||| ||| ||||| || | |||||||| || || ||||||||||| Sbjct 159020 GAATTCCAAAGCATCGATGTCTCCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTC 159079 Query 9172 ACCTACAA 9179 ||| ||| Sbjct 159080 GCCTGCAA 159087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 719085492951800