Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq17057 140 4e-28 seq11610 132 5e-26 seq6593 89.7 6e-13 seq34337 84.2 2e-11 seq332959 82.4 9e-11 >seq17057 Length=148899 Score = 140 bits (154), Expect = 4e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | ||| | ||||| |||| ||| ||| || ||||| ||||| || || Sbjct 117222 GCCACCCCTCAGACGAAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGA 117163 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 |||||||| | || || |||||||||||||| || || | ||||||||||| | || Sbjct 117162 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCAGGGGG 117103 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || ||||| ||| |||||| ||| | || | | ||||| || | ||||| Sbjct 117102 AATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCAC 117043 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||| |||||||| ||||| ||||| || || || ||||||||||||||| Sbjct 117042 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTTG 116991 >seq11610 Length=252271 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | || | ||||| |||| || ||| || ||||| |||||||| || Sbjct 43555 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 43614 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || |||||| | || || ||||| ||||| || || ||||| | ||||||||| | || Sbjct 43615 AGGGTGCGCCCATCTTCCAGCTGTTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGAGGG 43674 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || || || || ||||||| ||||| || | | ||||| || | ||||| Sbjct 43675 ATGCCTTCTTTTTCTTGGATCTTCCCCTTGACATTCTCGATGGTGTCACTAGGCTCCACC 43734 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| ||||||||||| || ||||| ||||| |||||||| |||||| Sbjct 43735 TCCAGAGTGATGGTTTTACCAGTCAGGGTTTTTACAAAGATCTGCATT 43782 >seq6593 Length=173140 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| |||| | ||| | |||| |||| || ||| || |||||||||||||| | Sbjct 88366 TGCCACCTCGCAGACGAAGCACCGTGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTG 88425 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||| | | || |||||| |||| | ||| |||| ||||| |||| | || Sbjct 88426 ACGGAGTGCAGCCATTCTCCAGCTGCATGCCTGTGAAAATCAGACGCTGTCGGTCAGGCG 88485 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| ||| || |||| || | ||||| || | || | Sbjct 88486 GAATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGA 88545 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | || ||||| |||||| |||| | || |||||||| ||||| Sbjct 88546 CCTCAAGGGTAATGGTCTTGCCCATCAGGATCTTCACAAAGATCTGCAT 88594 >seq34337 Length=37708 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | ||| | ||||| |||| ||| ||| || ||||| ||||| || || Sbjct 160 GCCACCCCTCAGACGAAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGA 101 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 |||||||| | || || ||||||||||| || || || | ||||||||||| | || Sbjct 100 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCAGGGGG 41 Query 46486 CACGCTCTCCTTGTCCATGATCTT 46509 | || ||||| ||| |||||| Sbjct 40 AATGCCTTCCTTATCCTGGATCTT 17 >seq332959 Length=315 Score = 82.4 bits (90), Expect = 9e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || | ||| | ||||| |||| || ||| || ||||| ||||| || || Sbjct 135 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 194 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || || |||||||||||||| || || | ||||||||||| | || Sbjct 195 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCAGGGGGA 254 Query 46487 ACGCTCTCCTTGTCCATGATCTT 46509 | || ||||| ||| |||||| Sbjct 255 ATGCCTTCCTTATCCTGGATCTT 277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561612558170040