Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq17057 149 1e-30 seq11610 145 2e-29 seq2312 136 9e-27 seq2656 132 1e-25 seq311227 129 1e-24 seq59220 127 5e-24 seq332959 125 2e-23 seq2274 116 8e-21 seq6593 114 3e-20 seq34337 113 1e-19 seq3131 98.7 2e-15 seq8567 91.5 3e-13 >seq17057 Length=148899 Score = 149 bits (164), Expect = 1e-30 Identities = 162/214 (76%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || |||||||| | |||||| | |||||||| Sbjct 117203 ACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 117144 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || ||||| || ||||||||||| || || || Sbjct 117143 AGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 117084 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| |||||||| |||||||| ||| ||||| || ||||| | ||| Sbjct 117083 ATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATGGTC 117027 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || |||| || || ||||| | |||||||| Sbjct 117026 TTGCCGGTCAGGGTCTTCACGAAGATTTGCATTT 116993 >seq11610 Length=252271 Score = 145 bits (160), Expect = 2e-29 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || ||||| |||||||||||||| || || ||||| || | || || Sbjct 43560 TCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGT 43619 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| ||||| || ||||| ||||| | | || ||||||||||| ||||| Sbjct 43620 GCGCCCATCTTCCAGCTGTTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCC 43679 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| ||||| || || |||||| ||||| |||||||| | ||||| || || Sbjct 43680 TTCTTTTTCTTGGATCTTCCCCTTGACATTCTCGATGGTGTCACTAGGCTCCACCTCCAG 43739 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || | || || || |||| |||||||| || | |||||| Sbjct 43740 AGTGATGGTTTTACCAGTCAGGGTTTTTACAAAGATCTGCATT 43782 Score = 136 bits (150), Expect = 9e-27 Identities = 166/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || ||||| |||||||||||||| || || ||||| || | || || Sbjct 43332 TCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGT 43391 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| ||||| || || || ||||| | | || |||||||| || ||||| Sbjct 43392 GCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCC 43451 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 || |||||||| || || |||||| ||||| |||||||| ||| ||||| || Sbjct 43452 CTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCCACCTC 43508 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | ||||| || ||||| || || ||||| | ||||| Sbjct 43509 CAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 43553 >seq2312 Length=925560 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| || || |||||||||||||| |||||||| ||||| || | | ||| | Sbjct 16635 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGT 16576 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || ||||| || || ||||| |||| ||| |||| | |||||| ||||| Sbjct 16575 CCATCTTCCAGTTGCTTGCCAGCTAAGATCAGTCTTTGCTGGTAAGAAGGAATTCCTTCC 16516 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || ||||| ||| || || || | || ||||| ||||| || || || Sbjct 16515 TTATCCTGGATTTTGGCCTTTACATTTTCTGTTGTATCCGAGGGCTCCACCTCGAGAGTG 16456 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| ||||||| || || ||||| | ||||| Sbjct 16455 ATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 16418 >seq2656 Length=305558 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| || || |||||||||||||| |||||||||||||| || | | ||| | Sbjct 78842 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATATTGTAGTCAGACAAAGTACAT 78783 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || ||||| || || ||||| |||| ||| ||||| |||||||| ||||| Sbjct 78782 CCATCTTCTAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 78723 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || | || ||| || || || || || ||||| || || ||||| || Sbjct 78722 TTATCCTGGGTCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACCTCAAGAGTG 78663 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || ||| || || || || | ||||| Sbjct 78662 ATGGTCTTCCCCATCAGGGTCTTCACAAAAATCTGCAT 78625 >seq311227 Length=303 Score = 129 bits (142), Expect = 1e-24 Identities = 155/209 (74%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACT--CTTTTTGAATATTGTAATCGGCAAGA 194976 ||| ||||| || || | || ||||| ||| ||||||| |||||||| ||| || Sbjct 207 TCTCAGTCTTAATACTAAATG--GAGTGTACTTTCTTTTTGGATATTGTAGTCGCTCAGT 150 Query 194977 GTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATG 195036 ||||| |||||||| | ||| ||||| || || || | ||||| || ||||| ||||| Sbjct 149 GTTCTTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGCTGATCTGGTGGAATT 90 Query 195037 CCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCA 195096 ||||| || ||||| || ||| || || ||||| || ||||| || ||| ||||| Sbjct 89 CCTTCCTTATCTTGGATCTTTGCTTTCACATTCTCTATTGTGTCTGATGGTTCTACTTCC 30 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTT 195125 | ||| | || ||||| ||||||||||| Sbjct 29 AAGGTTATTGTTTTTCCGGTCAAAGTTTT 1 >seq59220 Length=24887 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| || || |||||||||||||| |||||||| ||||| || | | ||| | Sbjct 15065 AGTCTCAACACTAGATGAAGAGTGGACTCATTTTGAATGTTGTAGTCAGACAAAGTACGT 15006 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || ||||| || || ||||| |||| ||| | ||| |||||||| |||||| Sbjct 15005 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTAGTCAGGAGGAATTCCTTCT 14946 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || ||| || || || || || ||||| || | || || || Sbjct 14945 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGAACTCGAGAGTG 14886 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||| ||||||| || || || || | ||||| Sbjct 14885 ATGATCTTCCCTGTCACGGTCTTCACAAAAATCTGCAT 14848 >seq332959 Length=315 Score = 125 bits (138), Expect = 2e-23 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || |||||||| | |||||| | |||||||| Sbjct 153 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 212 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || ||||| || ||||||||||| || || || Sbjct 213 AGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 272 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || || ||| |||||||| |||||||| Sbjct 273 ATCTTGGCCTTCACGTTCTCGATGGTGTC 301 >seq2274 Length=301413 Score = 116 bits (128), Expect = 8e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| || || |||||||||||||| |||||||| ||||| || | | ||| Sbjct 270442 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGT 270501 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || ||||| || | ||||| |||| ||| ||||| |||||||| |||||| Sbjct 270502 CCATCTTCCAGTTGCTTGCCAGGAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCT 270561 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCC 195081 || || || || || ||| || || || || || ||| Sbjct 270562 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCC 270600 >seq6593 Length=173140 Score = 114 bits (126), Expect = 3e-20 Identities = 134/180 (74%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||||||||| || |||||||| || | |||| | |||| || ||||| Sbjct 88391 GTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACGGAGTGCAGCCATTCTCCAGCTG 88450 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 | | |||| ||| || || || ||| |||| || |||||||| || |||||||| ||||| Sbjct 88451 CATGCCTGTGAAAATCAGACGCTGTCGGTCAGGCGGAATGCCCTCCTTGTCTTGGATTTT 88510 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 ||||| |||||| ||||||| ||| || || |||||||||| ||||| || Sbjct 88511 GGCTTTGACATTCTCAGTGGTGTC---ACTGGGCTCGACCTCAAGGGTAATGGTCTTGCC 88567 >seq34337 Length=37708 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || |||||||| | |||||| | |||||||| Sbjct 141 ACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 82 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || ||||| || ||||||||||| || || || Sbjct 81 AGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 22 Query 195052 ATTTTTTGCTTGACGTTCTC 195071 || || ||| |||||||| Sbjct 21 ATCTTGGCCTTCACGTTCTC 2 >seq3131 Length=405952 Score = 98.7 bits (108), Expect = 2e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| |||||||||||||| |||||||||||||| | | | || | Sbjct 263479 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATATTGTAGTTAGACAAAGGACAT 263420 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||||| || ||||| || | | ||| |||| ||| ||||| ||||||| ||||| Sbjct 263419 CCATCTTTCAGTTGCTTGCCAGTAACGATCAGTCTTTGCTGGTCGGGAGGAACTCCTTCC 263360 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCC 195081 || || || || | ||| || || || || || ||| Sbjct 263359 TTATCCTGGATCCTGGCCTTTACATTTTCTATTGTATCC 263321 >seq8567 Length=100185 Score = 91.5 bits (100), Expect = 3e-13 Identities = 145/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 194934 AAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAG 194993 ||||| ||||||||| ||||||| | ||||| || | ||| | |||||||| || Sbjct 93367 AAGGTAAAGAGTGGA--CTTTTTGCTTGTTGTAGTC----AAAGTGCATCCATCTTCCAG 93420 Query 194994 CTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAAT 195053 ||||| || || ||||| |||| ||| || || |||||||| ||||| || ||||| || Sbjct 93421 TTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCGGGAGGAATTCCTTCGTTATCTTGGAT 93480 Query 195054 TTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCC 195113 || ||| || || || || | || || || |||||| | || | | ||| | Sbjct 93481 CTTGGCCTTTACATTTTCTATTGCATCTGAGGGTTTGACTTCAGGAGTGATGGACTTCCT 93540 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || || | ||| | ||||| Sbjct 93541 TGTCAGGGTCTTCATGAAAATCTGCAT 93567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102186669374759