Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq52311 417 9e-112 seq197 123 3e-23 seq4890 116 4e-21 seq8207 102 9e-17 >seq52311 Length=1231 Score = 417 bits (462), Expect = 9e-112 Identities = 850/1247 (68%), Gaps = 62/1247 (5%) Strand=Plus/Minus Query 47837 TTTATTAAAATCAAAC-TTGTTATTTATA-----ACAAACCTATTAAGTGCTATAGATGC 47890 ||| ||||||||||| || || ||| || ||||| | | ||||| ||||| Sbjct 1231 TTTTTTAAAATCAAATGTTTTTGTTTCTACATTTACAAATTTTGGTAATGCTACTGATGC 1172 Query 47891 TAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATT 47950 || ||||||||| |||| |||| | ||| ||| |||||| ||||||| ||||| ||| Sbjct 1171 TAAATTACATACTGCTATTTCATCTTTATTTGTAAATTGTACTATTTCACAACATAAATT 1112 Query 47951 ACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTG--TTACATGCGTCCTTG 48008 || |||| || || || ||||||| |||||| | ||| |||||||| || || Sbjct 1111 ACTTGATTTTATTGTTCCTAAATTTTTTTGATTACTTT--TTGCATTACATGCATCTTTA 1054 Query 48009 TAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTC 48068 || | |||| | |||||||| |||||||| || |||| | ||| || ||||| | Sbjct 1053 TATAACATATATGGTGTTCCTGTTTCTATTTGTGATTGTA--ATA---TTGCAAAC---C 1002 Query 48069 CTAGCCTTTATA-----ACAGCTCTAGCTTTATTATCATGTTCGT-ATTTAGT--ATATA 48120 || ||| | || | | || | | | | ||| | || | || ||||| Sbjct 1001 ATAATTTTTGTGCTGGTACTGTTTTACGTCCCATTCCTTTTTCTTCATATTGTTCATATA 942 Query 48121 ACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCA 48180 | || |||||||| || || | || | || ||| || |||||||| |||||||| | Sbjct 941 ATTTATCAAATTCTTCTCCCCATACTTCATATAATCCTCTACATTCATCTGGACACATTA 882 Query 48181 ATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTA 48240 ||| ||| | | || || |||||| ||||||||| |||||||||||| | || Sbjct 881 ATGTCCATTGTTTATTTGCTTCTACTCTTTTCATAAATAAATCTGGTATCCATAATGCAT 822 Query 48241 TAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGT 48300 ||||||||| || | ||||| ||||||| ||| ||| || | | || | || | Sbjct 821 AAAATAAATCTCTTGCTCTTAAATCTTCATGACCATGATTTTTTCTTAAATCTAAAAGTT 762 Query 48301 CCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTAC 48360 | |||||| |||||||||||||||||||||||||| | | ||| || ||| || Sbjct 761 TAAATATATCTGCATGCCATGGTTCTAAATATATTGCAAATGAACCCTTTCTTTTTCCAC 702 Query 48361 CTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCAT 48420 ||||||| |||| ||| | ||||| ||| | | | |||||||||| || || |||| Sbjct 701 CTCCTTGGTCTACATACTTTGCAGTTGAATTAAATATTTTTAACATTGGTACTATTCCAT 642 Query 48421 TTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAA 48480 | ||||| ||||| ||||| |||||| |||||| ||||| || ||| ||| || | Sbjct 641 TAGATATTCCATTAGTTCCTCTAATATATGATCCACTTGCTCTAATTTTATGAATAGATA 582 Query 48481 TACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTC 48540 || || || ||||| ||| ||| | ||||| |||| | || || | |||| Sbjct 581 ATCCAATTCCTCCTGCACACTTACTTATAAATGCACATTGTTTTAATGTTGCAAATATTC 522 Query 48541 CTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAG 48600 |||||| ||||||| ||||| ||||| |||||| |||||||| |||| | Sbjct 521 CTTCTAATGAATCATCTTGCATATCTAATAAAAAACATGATGACATTTGTGGATTTTTTG 462 Query 48601 TTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGA--TAACAATTT 48658 | || ||||||||||||||||| | |||||| |||| || ||| ||| | || || Sbjct 461 TACCAGAATTAAATAATGTTGGTGTTGCATGTGTAAA--ATATCTTTGACTCATTAAATT 404 Query 48659 ATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAA 48718 |||||||| || |||| || | |||||| || ||||| | |||||| Sbjct 403 ATATGTTTGTATTGTTTTTTCTAAATTTCCACAATGTATTCCACATGATACTCTCATTAA 344 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||||| ||| |||||||| | ||||| ||||| | | || | ||||||| |||| || Sbjct 343 CATATGTTGTGGTCTTTCTGCTATTTTTCCATTTACTCTTAATAAATATGATCTTTCTAA 284 Query 48779 TGTTTTAAAACCAAAATAGTTGTATGAAAAGTC---GTTATCAT-TAATAATTGATGAAT 48834 ||||||||| |||||||| | ||| ||| || |||| || || | ||||| | Sbjct 283 TGTTTTAAATCCAAAATAATCATATTGAAAATCTCTTTTATAATCTATTGCTTGATTTAA 224 Query 48835 TTATTCTTTCCTT--------ATGTTTATATACTACATCCATTA---------CATTT-T 48876 || |||||| || | ||||||||| |||| ||| ||||| | Sbjct 223 TTTTTCTTTATTTTCTATTACAAATTTATATACATCATCACTTATTAATGAAGCATTTGT 164 Query 48877 TTGATATAATTGATT--CCTTGT-AAAGATCTTCTACAACATCACTAAATAttttttttG 48933 | ||||| || || || | || || ||||| || ||||||||| ||| || Sbjct 163 ATTATATACATGTTTAAAATTATGTAATAT-TTCTATTACTTCACTAAATTCATTTAATG 105 Query 48934 TTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATAGCATAATCTGGATG-- 48991 | | |||||| | |||| ||| | ||| | || |||||| | | |||||||||||| Sbjct 104 TATTTTTATGTAAATTATCTATTGTTATATTTGCTGCTAATTTTGAATAATCTGGATGTG 45 Query 48992 -AATTGTTGTACATGTACTAGATATTTCTGCTGCTAATATATCTAAT 49037 || || || ||| || || ||| ||| |||||| ||||||| Sbjct 44 TAACTGCCATATATGCAC---ATGTTTGTGCAGCTAATTCATCTAAT 1 >seq197 Length=217379 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||||||||| || || | |||||| ||||| || | |||||||||||||||| ||| | Sbjct 121521 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 121462 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || ||||| ||||| ||||| | Sbjct 121461 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGG 121402 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 121401 CTACCACACGTTCTCC 121386 Score = 105 bits (116), Expect = 7e-18 Identities = 112/146 (77%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || || ||||||| | ||| ||||||||| | || || ||| |||||||| Sbjct 123129 TTAGAAGTCGGCATCCAAGGTAAAGGAATTCTCTG--TCGGACTTGACATCACTCCCATC 123072 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| ||| | ||||| || |||||||| ||||| || ||||| | ||| ||| | Sbjct 123071 CTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTT 123012 Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755 |||||||| ||||||||||||| ||| Sbjct 123011 TCCATAAAGTCAAATGGATTTTCTAC 122986 >seq4890 Length=280387 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | ||||| ||||| || | |||||||| ||||||||||| ||| Sbjct 127883 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 127824 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| ||||| || ||||| || |||||||| || ||||| || Sbjct 127823 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 127764 Query 19105 ACTAGTCTTTCTCC 19118 || | ||||| || Sbjct 127763 ACCACCCTTTCCCC 127750 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 ||||| || ||||||| ||| ||||||||||| ||||| |||||||| || || |||| Sbjct 141455 TGATACTCTGCAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAGGAAATGTTTTCC 141396 Query 18733 ATAAAATCAAATGGATTTT 18751 ||||||||||| ||||||| Sbjct 141395 ATAAAATCAAAGGGATTTT 141377 >seq8207 Length=439286 Score = 102 bits (112), Expect = 9e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || | || || ||||| ||||| ||||| || || Sbjct 388241 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATTGAC 388182 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||||||||| | || ||||||||||| || |||||||| | |||| | ||| || Sbjct 388181 TCATTATTTCCCAGTATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 388122 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 388121 TTTCTTATACCATA 388108 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || ||||| ||||||||||| | ||| ||| |||| || | |||||| || | Sbjct 390471 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGTATGT 390412 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | |||||| || |||||||| || |||||||| || |||||||| | | | | Sbjct 390411 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCGGCTGCCATCTTGAGTACAGTTT 390352 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || ||||| || || ||||||| || || | ||| || || Sbjct 390351 TCTGAGAGATTTCCCACACGGTCTTATAAAGCTGCTTCAGGTCATCAGG 390303 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 || || | ||| || | || ||||| ||||| ||||||| ||||| || | | || Sbjct 367339 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 367280 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 |||||||||||| ||| ||| ||||| || || || || | |||||| | ||| ||| Sbjct 367279 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 367220 Query 48720 ATATATTGAGGTCTTTCA 48737 || | ||| ||||||||| Sbjct 367219 ATGTGTTGTGGTCTTTCA 367202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558503033654280