Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq11610 105 5e-18 seq17057 100 2e-16 seq59220 98.7 8e-16 seq2274 89.7 4e-13 seq6593 87.8 1e-12 seq34337 84.2 2e-11 >seq11610 Length=252271 Score = 105 bits (116), Expect = 5e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || ||||| || || ||||| || | | || | |||| |||| || Sbjct 43579 TGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGT 43638 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| ||||| | ||| || || || || ||||||||||| ||||| || || Sbjct 43639 TTGCCTGCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCTTCTTTTTCTTGGATCTTC 43698 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | |||||| | ||||| || ||||||| ||||| || || Sbjct 43699 CCCTTGACATTCTCGATGGTGTCACTAGGCTCCACCTCCAGAGTGATGGTTTTACCAGTC 43758 Query 101447 AAAGTTTTTACAAATATCTGCATGGT 101472 | ||||||||||| |||||||| || Sbjct 43759 AGGGTTTTTACAAAGATCTGCATTGT 43784 >seq17057 Length=148899 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || |||||||| ||||| || || |||||||| | | ||| | | |||| |||| ||| Sbjct 117197 TGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGC 117138 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| || | ||||| || || || ||||||||||| ||||| || || || Sbjct 117137 TTGCCGGCAAAGATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTG 117078 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | |||||| | ||||| || || |||| || |||||||| Sbjct 117077 GCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTC 117018 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || || || ||||| Sbjct 117017 AGGGTCTTCACGAAGATTTGCAT 116995 >seq59220 Length=24887 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || |||| |||||| || || || ||||| || ||||| || | | ||| | |||| Sbjct 15059 AACACTAGATGAAGAGTGGACTCATTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCT 15000 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||| |||||| || ||||| |||| | || | || || ||||| ||||||||||| Sbjct 14999 TCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTAGTCAGGAGGAATTCCTTCTTTATCC 14940 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || || || |||||| |||||| || || || | || | || ||||||| | Sbjct 14939 TGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGAACTCGAGAGTGATGATC 14880 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || | || || ||||| |||||||| Sbjct 14879 TTCCCTGTCACGGTCTTCACAAAAATCTGCAT 14848 >seq2274 Length=301413 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || |||| |||||| || || || ||||| || ||||| || | | ||| |||| Sbjct 270448 AACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCT 270507 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||| |||||| || | ||| |||| | || || || || ||||| ||||||||||| Sbjct 270508 TCCAGTTGCTTGCCAGGAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCTTTATCC 270567 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || || || |||||| |||||| || || | | | || || ||||||| ||| Sbjct 270568 TGGATCTTGGCCTTTACATTTTCTATTGTATCCTAGGGCTTGACCTCGAGAGTGATGGTT 270627 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || ||||| |||||||| Sbjct 270628 TTCTTCGTCAGGGTCTTCACAAAAATCTGCAT 270659 >seq6593 Length=173140 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || |||||||| || | ||| | | ||| |||| ||| Sbjct 88392 TGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACGGAGTGCAGCCATTCTCCAGCTGC 88451 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 | |||| || |||| ||||||| | || ||||||||||| || || ||||| ||||| Sbjct 88452 ATGCCTGTGAAAATCAGACGCTGTCGGTCAGGCGGAATGCCCTCCTTGTCTTGGATTTTG 88511 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| | || |||||| | || || ||||| || | || ||||| | Sbjct 88512 GCTTTGACATTCTCAGTGGTGTCACTGGGCTCGACCTCAAGGGTAATGGTCTTGCCCATC 88571 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | | || ||||| |||||||| Sbjct 88572 AGGATCTTCACAAAGATCTGCAT 88594 >seq34337 Length=37708 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || |||||||| ||||| || || |||||||| | | ||| | | |||| |||| ||| Sbjct 135 TGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGC 76 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || || ||||| || | ||||| || || || ||||||||||| ||||| || || || Sbjct 75 TTGCCAGCAAAGATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTT 17 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393799938294189