Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq311227 86.0 5e-12 seq17057 86.0 5e-12 seq332959 84.2 2e-11 seq512960 82.4 6e-11 seq34337 82.4 6e-11 seq13283 82.4 6e-11 >seq311227 Length=303 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 48555 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCG 48614 || || ||||| || || || |||||||| |||||||| || || ||| | || Sbjct 197 AATACTAAATGGAGTGTACTTTCTTTTTGGATATTGTAGTCGCTCAGTGTTCTTCCATCT 138 Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674 || ||||| ||||| |||||||| | || || ||||| | |||| || ||||| || Sbjct 137 TCTAACTGTTTACCAGCAAATATTAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCT 78 Query 48675 CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTT 48734 |||||| ||| ||| | | | ||||| | || || |||| || || ||| Sbjct 77 TGGATCTTTGCTTTCACATTCTCTATTGTGTCTGATGGTTCTACTTCCAAGGTTATTGTT 18 Query 48735 TTTCCCGTCAAAGTTTT 48751 ||||| ||||||||||| Sbjct 17 TTTCCGGTCAAAGTTTT 1 >seq17057 Length=148899 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || || | |||| || || || |||||| || || ||||||||||| Sbjct 117222 GCCACCCCTCAGACGAAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGA 117163 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || | || |||| |||||| |||||||| || || ||||| || || | ||| Sbjct 117162 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCAGGGGG 117103 Query 48659 AACGCCCTCCTTGTC 48673 || ||| ||||| || Sbjct 117102 AATGCCTTCCTTATC 117088 >seq332959 Length=315 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | |||| || || || |||||| || || ||||||||||| Sbjct 135 CCACCCCTCAGACGGAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 194 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || | || |||| |||||| |||||||| || || ||||| || || | |||| Sbjct 195 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCAGGGGGA 254 Query 48660 ACGCCCTCCTTGTC 48673 | ||| ||||| || Sbjct 255 ATGCCTTCCTTATC 268 >seq512960 Length=5958 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | || | |||||| | ||| | ||| ||| |||||||| ||||| |||| Sbjct 4556 CGCCACCACGAAGTCTCAACACAAGATGAAAAGTGGACTCCTTTTGAATGTTGTAGTCAG 4497 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | | | | || | || | || ||||| || ||||| ||||||| || || || | Sbjct 4496 ACAAAGTACGTCCATCTTGCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAAGAG 4437 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 ||| || ||||| | ||||| |||||| | | | ||||| | || | Sbjct 4436 GAATTCCTTCCTTATTCTGGATCTTGGCCTTTACATTTTCTATGGTATCTGAGGGCTTGA 4377 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||| | || || || || ||||||| ||| || ||||||||||||||| || Sbjct 4376 CCTCGAGAGTGATGGTCTTCCCCGTCAGAGTCTTCACAAAAATCTGCATCTTG 4324 >seq34337 Length=37708 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || || | |||| || || || |||||| || || ||||||||||| Sbjct 160 GCCACCCCTCAGACGAAGGACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGA 101 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || | || |||| |||||| || ||||| || || ||||| || || | ||| Sbjct 100 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCAGGGGG 41 Query 48659 AACGCCCTCCTTGTC 48673 || ||| ||||| || Sbjct 40 AATGCCTTCCTTATC 26 >seq13283 Length=25003 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | || | |||||| | ||| | ||| ||| |||||||| ||||| |||| Sbjct 7251 CGCCACCACGAAGTCTCAACACAAGATGAAAAGTGGACTCCTTTTGAATGTTGTAGTCAG 7192 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | | | | || | || | || ||||| || ||||| ||||||| || || || | Sbjct 7191 ACAAAGTACGTCCATCTTGCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAAGAG 7132 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 ||| || ||||| | ||||| |||||| | | | ||||| | || | Sbjct 7131 GAATTCCTTCCTTATTCTGGATCTTGGCCTTTACATTTTCTATGGTATCTGAGGGCTTGA 7072 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||| | || || || || ||||||| ||| || ||||||||||||||| || Sbjct 7071 CCTCGAGAGTGATGGTCTTCCCCGTCAGAGTCTTCACAAAAATCTGCATCTTG 7019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378555084945171