Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq7025 379 2e-100 seq9486 170 2e-37 seq1986 113 5e-20 seq4346 95.1 1e-14 >seq7025 Length=582757 Score = 379 bits (420), Expect = 2e-100 Identities = 678/985 (69%), Gaps = 11/985 (1%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| |||| ||| || | ||||| ||| ||||||||| || || Sbjct 249264 CAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAATGTCCGTGTCGAATTTGTTGGC 249323 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| || | || ||||| || ||| || | || || ||||| || Sbjct 249324 AAACAAGTGGTGCACGCGCAACAG---CCAGTTCAAGTCCCCAGCTCCAAAAACGCACAC 249380 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||| || | ||| |||||| |||| |||||||| | || || || | ||||| ||||| Sbjct 249381 GGAGCGCACGTGGACGCCGCTGCACGGCGGGTAGGGGGCGCCCTTGGAAACGTCTCCTTC 249440 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 | |||||||||| || ||||||||||| ||||| |||||||| || |||||||| || | Sbjct 249441 GAAGTACTGCCATTTAACAAACCTGGCAATCGCTTGCATGTCAGACGTGTCGTACTTATG 249500 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 ||| || | | || || || |||| || | ||| | |||||||| || | || Sbjct 249501 GCTCAAGGACAGTGACCCTGGGACTTCGGGGATCCTCTGAATAGTGGCCCAGAGATACTC 249560 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411 ||| |||||||| ||||| || | ||| ||||| |||| | ||| || | | || Sbjct 249561 GTCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGGATATTTTGGTTCTGGAG 249620 Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471 |||| || || || | || ||||| || || ||||| || || | ||| | Sbjct 249621 CACGTACTCCACATACTCCCTACTGACCACAAAATAGGCACTGCCTGAAAACAGAGGTGT 249680 Query 160472 GGGTATAGGCGGCGTGTCTTT-GTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCG 160530 | ||| || ||| ||| ||| || ||||| | || | ||| ||||| | Sbjct 249681 TTCAAGAGGTGGA-TGTATTTTGTCAGTCCCCGTGTTTGTCAGCTTTCCATTCACAACTT 249739 Query 160531 CGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGT 160590 | | |||| | |||||| | | || || | |||||| | ||||| ||||| | | Sbjct 249740 CATAATGCTTTTGCCACCTTTCTTTTTTATGGGATGGCATTCTCTCCGTTTCTAGGTTAT 249799 Query 160591 TGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGT 160650 | |||| | | | || |||| | |||| || || ||||| || || | ||||| | Sbjct 249800 TCTCACCCATCAACAACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATAGGAAAAT 249859 Query 160651 CGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCA 160710 | ||||||| | ||||||| ||||||||| | || ||| || |||||| || Sbjct 249860 CCATACCGCAGAGATTTATCAGGTACTTCCAGTCTGCATTCATCCGGTAGAGGTCCTGCA 249919 Query 160711 TGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTAC 160770 |||| |||| || ||||| || ||||||||||| || ||||| ||| |||| || | || Sbjct 249920 TGCAGTTAAGGTCAGCCTGAACCCGGCTCCAGGACGCATACACCACGCTCTCCAGCTGAC 249979 Query 160771 TGGCCACAAAGACGTTATCGAAACACGACACGATTCCCA---CCACCGCCAGAAAGAACA 160827 ||||||||||||| ||| ||| || || ||| || | | | |||| |||| | Sbjct 249980 TGGCCACAAAGACATTACTGAAGCAGGATGTGATGCCAATAGCTGCAGCCAAAAAGGA-- 250037 Query 160828 TCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCC 160887 || || | ||| ||||||||| | ||||| | ||||||||| |||||||||| Sbjct 250038 -TTTCTCTGATTTTGTGTCCACGTGAATACAATAGAAATTCTGAGGCATATAGATGGCCC 250096 Query 160888 TGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAA 160947 | || | ||| || | ||| || || || ||||| | ||| ||||| || ||||| |||| Sbjct 250097 TCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATAGAATATGCTATTGGAA 250156 Query 160948 ACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAAT 161007 |||| | ||| || ||| || | | | | || || ||| ||||||| ||| | Sbjct 250157 ACTCCGCCTCTTCTTTACTAAGTGGTTCTATAATATATTTGCGCTTCTTGATGAAAGCAG 250216 Query 161008 CACAATCCCGCGTCATGTTGATATA 161032 ||||||| | |||||||| || || Sbjct 250217 CACAATCACCAGTCATGTTTATGTA 250241 >seq9486 Length=320400 Score = 170 bits (188), Expect = 2e-37 Identities = 228/317 (72%), Gaps = 0/317 (0%) Strand=Plus/Plus Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212 ||||| | ||| | | |||| || ||||| || || || || || || ||||||||| || Sbjct 9229 AGAGTGAGGCAGGCTATTCCTGAGATCTTTCCAGAACCAAAGGTATTAAAGAGGCACTTG 9288 Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272 | || | || ||||||| |||||||||||| || || | |||||||| ||| ||| Sbjct 9289 TAACACGCCTCATCCTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGAGTCCC 9348 Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332 | ||| || || || | || || || | ||| || |||||||| || ||||||||| Sbjct 9349 AGCTGGGTGATATTTATCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCATGGTTCTCG 9408 Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392 ||| ||||| |||||| || ||||| ||||| || || ||||| || || |||| | Sbjct 9409 CTGTAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAATCAAA 9468 Query 168393 ACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGC 168452 || || | | ||||| |||||||| | ||||| || ||||||||||| ||| Sbjct 9469 ACTTCCTGGGGATTTTGCAGAGAACATCTTAAAGAAGCAGGTGTGTTCAGCAGCCCTCTT 9528 Query 168453 TCATCTTGAGTTACGAC 168469 |||| || || || || Sbjct 9529 ACATCCTGGGTCACCAC 9545 Score = 123 bits (136), Expect = 3e-23 Identities = 162/221 (73%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 167883 GTTTGCC-GTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTT 167941 |||| || ||| ||| || ||||| |||| |||||||||| ||| ||||| || || Sbjct 6633 GTTTCCCTGTA-GTCAGTCACAGTCCCCAGGTGTAGTACCTGGCAGATCACATCC---TT 6688 Query 167942 TCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATT 168001 || || || ||||| || ||||| | || | ||||| || ||| ||| |||||||| Sbjct 6689 CCCCACCTGTCTCTTGGGGTCTTTGATCTGGAGGATGCTGGTGACAGATGTTGTTCCATT 6748 Query 168002 GCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATAT 168061 | ||||| | ||| | | || ||||||||||||||||| | | || |||||| | || Sbjct 6749 GGGATGTGAGACGATCTCGGTACTGTTCTCAATCCCTGACTCAGAGACTTTCCAGGAGAT 6808 Query 168062 TACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 | ||| || || || || | |||||||| || ||||||| Sbjct 6809 CATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTA 6849 >seq1986 Length=81162 Score = 113 bits (124), Expect = 5e-20 Identities = 198/288 (69%), Gaps = 3/288 (1%) Strand=Plus/Plus Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 ||| || || ||||| || || || || |||||| || |||||||||| ||| |||| Sbjct 29972 GTCAAACTTGTTTGCCAAGAGGTGATG---GTTCTGGAGAATCCAGTGCAAGTCCCCGGC 30028 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 |||| | | ||||| || || || | || |||||| | ||| | || || | Sbjct 30029 CCCGTAAATGCAGATGGCCCGCTGATGGATTCCAGAGCAAGGTGCGTAAGGTGCCCCCAT 30088 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 || || || |||| | ||||||||| || | ||||||||| || |||||| || Sbjct 30089 GCTGACATCTCCCTCGTGGCCCTGCCACTTGACCAGCCTGGCTATGGCAGTCATGTCTGA 30148 Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGT 160336 | || || ||| | |||||| | || || | | || |||||| ||||| Sbjct 30149 GACGTGATACTTGGAGTGGTAGGGAACAGAGCCAGGCATCCATGGTGCACGCTGAAGGGT 30208 Query 160337 GGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCAT 160384 |||||| |||||||| |||||||| || ||||| || | |||||| || Sbjct 30209 GGCCCAGAGGTGTTCATCGGGGCTATAGGTGTCTTTGGCCCATTCAAT 30256 >seq4346 Length=140157 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 176211 TTGTTTGTATCTAGTATATGTAGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTA 176270 |||||| | |||| | | ||||| || |||| |||| || |||| |||||| | Sbjct 26337 TTGTTTTTGTCTACTTCCTTCAGATACTTAGCTAGCTCACTGGGAGAGTTATAATCTTCC 26396 Query 176271 ACATGTATAAATGCGTGTGGTGGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAA 176330 ||||| || |||| | || |||||| || || ||||| |||| || || || || ||| Sbjct 26397 ACATGAATGAATGAATCTGCTGGAATATAATTCTCATAGTTTTCCCTAGATGGCCCCAAA 26456 Query 176331 ACTATTGGTACGGTACGTGCTAATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTG 176390 || | || || | | || | || | ||||| |||||||| |||||| || || Sbjct 26457 ACAACAGGCACAGAGCCAGCCAGAAAAGCATTGTAGAGCTTTTCTGTGATGTAATCTTTG 26516 Query 176391 TGAATTGAGTTTTCAAAAGCTAAATAGAACTTACA 176425 || |||||||||||||| | | ||| || || || Sbjct 26517 TGGATTGAGTTTTCAAAGGAAAGATAAAATTTGCA 26551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 573516504782520