Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq52311 313 1e-80 >seq52311 Length=1231 Score = 313 bits (346), Expect = 1e-80 Identities = 670/983 (68%), Gaps = 36/983 (4%) Strand=Plus/Minus Query 25568 TTTACAAATTTAGATAAAGCGATTGATGCTAAATTACAAACAGCTTGTTCTTTCCCGTCA 25627 ||||||||||| | ||| || | ||||||||||||||| || ||| ||| | | Sbjct 1200 TTTACAAATTTTGGTAATGCTACTGATGCTAAATTACATACTGCTATTTCATCTTTATTT 1141 Query 25628 GAATATTCATTGATCTCGATACATAAGTTGCTAGATTTGATTACTCCATAATTCTTTTGA 25687 | | ||| || || |||||| || || ||||| ||| ||| |||| |||||| Sbjct 1140 GTAAATTGTACTATTTCACAACATAAATTACTTGATTTTATTGTTCCTAAATTTTTTTGA 1081 Query 25688 TTATTGCATGTATTGACAAT-ATCTTTATATCCTAAATATGGCGTTCCTGTTTCAATTTG 25746 ||| | || ||| ||| |||||||||| | |||||| ||||||||||| ||||| Sbjct 1080 TTACTTTTTGCATT-ACATGCATCTTTATATAACATATATGGTGTTCCTGTTTCTATTTG 1022 Query 25747 AGATACTAAAATTTTCTCCCAAAGTTCTCTCGCTTTTACTTTCTTTACGAAGTTACCATC 25806 ||| ||| ||| ||| | || | ||| |||| | |||||| | |||| Sbjct 1021 TGATTGTAATATTGCAAACCATAATTTTTGTGCTGGTACTGT-TTTACG----TCCCATT 967 Query 25807 AGAAACAGCTCTTTCGTAAAGTTCA-ACAAATTCTTGATTTATTTTCTCAGAGAAAAGTT 25865 | | ||| || ||||| | || || | | || || || | | | || Sbjct 966 C----CTTTTTCTTCATATTGTTCATATAATTTATCAAATTCTTCTCCCC----ATACTT 915 Query 25866 TGCCATATTTATTGAGAATAAT-ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCA 25924 ||||| || | | | || |||||| | ||| ||| | |||| || Sbjct 914 ---CATATA-ATCCTCTACATTCATCTGGACACATTAATGTCCATTGTTTATTTGCTTCT 859 Query 25925 ACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATT 25984 ||| | | ||||||||||||||| ||||| | |||||||||||||||||| ||||| | Sbjct 858 ACTCTTTTCATAAATAAATCTGGTATCCATAATGCATAAAATAAATCTCTTGCTCTTAAA 799 Query 25985 TCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGT 26044 ||||| | || ||||| ||| ||| |||||| | | ||| ||||||| ||||||||| Sbjct 798 TCTTCATGACCATGATTTTTTCTTAAATCTAAAAGTTTAAATATATCTGCATGCCATGGT 739 Query 26045 TCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCA 26104 |||||||| || ||||| ||| ||||||||||| || ||||| ||||| || ||||| Sbjct 738 TCTAAATATATTGCAAATGAACCCTTTCTTTTTCCACCTCCTTGGTCTACATACTTTGCA 679 Query 26105 GTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGA 26164 ||| ||| || | ||| |||||||| |||| |||| | || | ||| || || | | Sbjct 678 GTTGAATTAAATATTTTTAACATTGGTACTATTCCATTAGATATTCCATTAGTTCCTCTA 619 Query 26165 ATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATA--CCGATTCCACCAGCCCATT 26222 || | ||||| | | |||||| | ||| || ||| || ||||| || || || | Sbjct 618 ATATATGATCCACTTGCTCTAATTTTATGA--ATAGATAATCCAATTCCTCCTGCACACT 561 Query 26223 TTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCA 26282 | ||| |||||| | | | ||| | || ||||||| || |||| ||| || Sbjct 560 TACTTATAAATGCACATTGTTTTAATGTTGCAAATATTCCTTCTAATGAATCATCTTGCA 501 Query 26283 TTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCG 26342 | ||||||||||||| || || | ||| | || |||| || |||||||||||||| | Sbjct 500 TATCTAATAAAAAACATGATGACATTTGTGGATTTTTTGTACCAGAATTAAATAATGTTG 441 Query 26343 GTGTAGCATGAGTATAATATCCTTCACTCAAAGCTGTATAAGTTTCAAGAACTTCATCGA 26402 |||| ||||| ||| |||||| || ||||| |||| |||| | || || | Sbjct 440 GTGTTGCATGTGTAAAATATCTTTGACTCATTAAATTATATGTTTGTATTGTTTTTTCTA 381 Query 26403 TATTGTAATTACTAACTTCAATAGCTGTTCTTAACCACATATATTGAGGTCGTTCAATTA 26462 ||| | | | | || | | ||| | |||||| ||| |||| ||| | Sbjct 380 AATTTCCACAATGTATTCCACATGATACTCTCATTAACATATGTTGTGGTCTTTC---TG 324 Query 26463 CATTATTTTCCGCAT---CTCTAATCAAATAAGATTTTTCTAAAGTTTTCAATCCAAAAT 26519 | |||||| | ||| |||| | ||||| ||| ||||||| ||||| |||||||||| Sbjct 323 C--TATTTTTC-CATTTACTCTTAATAAATATGATCTTTCTAATGTTTTAAATCCAAAAT 267 Query 26520 AATCATGATTG-AAATCTCTTTT 26541 |||||| |||| ||||||||||| Sbjct 266 AATCAT-ATTGAAAATCTCTTTT 245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 251457400620275