Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq59220 95.1 2e-14 seq11610 95.1 2e-14 seq11237 87.8 3e-12 seq2274 86.0 1e-11 >seq59220 Length=24887 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | || | ||| || ||| || ||||| || || || | ||| || Sbjct 15056 ACTAGATGAAGAGTGGACTCATTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 14997 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| || || ||||| || | ||| || | |||||||| |||||||||||||| || Sbjct 14996 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTAGTCAGGAGGAATTCCTTCTTTATCCTGG 14937 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| || ||||| || | ||| | || ||||| || | || Sbjct 14936 ATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGAACTCGAGAGTGATGATCTTC 14877 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| | || || ||||| || ||||| || Sbjct 14876 CCTGTCACGGTCTTCACAAAAATCTGCATCTT 14845 >seq11610 Length=252271 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 ||||| |||| || | |||||| || || ||||| || | || | ||| || Sbjct 43573 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 43632 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||||| || ||||| || || ||||| || || ||||| || |||||||| ||||| Sbjct 43633 AGCTGTTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCTTCTTTTTCTTGG 43692 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || || || | ||| || || || || ||| || || ||||| || |||||| Sbjct 43693 ATCTTCCCCTTGACATTCTCGATGGTGTCACTAGGCTCCACCTCCAGAGTGATGGTTTTA 43752 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || ||||||||||| || |||||| Sbjct 43753 CCAGTCAGGGTTTTTACAAAGATCTGCATT 43782 >seq11237 Length=76729 Score = 87.8 bits (96), Expect = 3e-12 Identities = 300/439 (68%), Gaps = 44/439 (10%) Strand=Plus/Plus Query 46773 taatatatattataataaactgtat-tatttgactatttttaataatatatgttatggta 46831 || |||||||||||||| | ||| |||| | |||| || ||| ||||| ||| | Sbjct 32427 TATTATATATTATAATATATAATATATATTATA-TATTATTTATATTATATAATATATCA 32485 Query 46832 tatatgtaatt------tACGATAT-TTGGAAATTTTAATATGTTTACTGATATGATAT- 46883 ||||| | ||| || ||||| || | |||||||| | || ||||||||||| Sbjct 32486 TATATATTATTATATTATATGATATATTATATATTTTAATTTATTATATGATATGATATA 32545 Query 46884 TTA-ATAATTGGATAAACTGTATAAAAT-TAAGAGA-CATATGTATTATTTTATCTATAA 46940 ||| ||| || ||| | |||| || || | | |||| || | |||| | | || Sbjct 32546 TTATATATTTTAATATATAATATATTATATATCATATAATATATAATGTTTTTTATGTAC 32605 Query 46941 TA-ACTATTATATTTAATTGTGCATTAACAGTATTA-GAATtatactcattcatatattt 46998 || |||| |||| || || || | ||| | ||||| | || |||| | | |||||| | Sbjct 32606 TATACTA-TATAATT-ATAGTATAGTAAAATTATTATGCATCATACATAAT-ATATATGT 32662 Query 46999 aaaacatatacatatatcaaatatagcactatgtataataaataCTTCGttacttttaat 47058 || | ||||| |||||||| ||||| | ||||||||||| || || | || || Sbjct 32663 AATATATATA-ATATATCATATATA-----TTATATAATAAATA-TTATATA-TATTTAT 32714 Query 47059 taatatatttataaatttattattaatgtatgctatatacttaaatattagaattatagt 47118 | |||||||||| | | || || ||| |||||| ||| |||||| | |||| | Sbjct 32715 AATTATATTTATA----TGTGATATATATATTATATATA-TTATATATTATA--TATAAT 32767 Query 47119 aaa---aatatttat--aatactatatattattagcatcgcgttgtatata-ttat---t 47169 ||| |||| ||| ||| ||||| ||||| ||| || |||||| |||| | Sbjct 32768 AAATGTTATATGTATTGTATATCATATA-TATTATCAT-ATATTATATATATTTATATGT 32825 Query 47170 aactaatattaaaatatat 47188 | |||||| |||||||| Sbjct 32826 AGATAATATATAAATATAT 32844 >seq2274 Length=301413 Score = 86.0 bits (94), Expect = 1e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | || | ||| || ||| || ||||| || || || ||| || Sbjct 270451 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTCC 270510 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| || || | ||| || | ||| || || |||||||| |||||||||||||| || Sbjct 270511 AGTTGCTTGCCAGGAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCTTTATCCTGG 270570 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| || ||||| | | || || || ||||| || ||||| Sbjct 270571 ATCTTGGCCTTTACATTTTCTATTGTATCCTAGGGCTTGACCTCGAGAGTGATGGTTTTC 270630 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || || ||||| || ||||| || Sbjct 270631 TTCGTCAGGGTCTTCACAAAAATCTGCATCTT 270662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 893883375674640