Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq311227 131 3e-25 seq59220 114 3e-20 seq512960 107 4e-18 seq13283 107 4e-18 seq11610 105 1e-17 seq2274 105 1e-17 seq2656 104 5e-17 seq8567 95.1 2e-14 seq3115 89.7 1e-12 >seq311227 Length=303 Score = 131 bits (144), Expect = 3e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| || | |||||||||||| | ||| ||||| |||||| || || Sbjct 215 ATTCCTCCTCTCAGTCTTAATACTAAATGGAGTGTACTTTCTTTTTGGATATTGTAGTCG 156 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | ||||| | |||| || || |||||||||||||| ||||| | || ||||| ||| Sbjct 155 CTCAGTGTTCTTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGCTGATCTGGT 96 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| |||||||| || || ||| ||||| ||| | ||||| | |||| Sbjct 95 GGAATTCCTTCCTTATCTTGGATCTTTGCTTTCACATTCTCTATTGTGTCTGATGGTTCT 36 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTT 192521 ||||| | || || ||||| || || || ||||| Sbjct 35 ACTTCCAAGGTTATTGTTTTTCCGGTCAAAGTTTT 1 >seq59220 Length=24887 Score = 114 bits (126), Expect = 3e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || |||| ||| | ||| | ||| ||| || || || || |||| Sbjct 15075 ACCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCATTTTGA-ATGTTGTAGTCAG 15017 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| |||| ||| || ||||||||||| | ||| || | ||||| | Sbjct 15016 ACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTAGTCAGGAG 14957 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||||||||| || || || |||||||| ||| | ||| || | || | Sbjct 14956 GAATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGA 14897 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| ||| | || || || | || || | ||| |||||||| || Sbjct 14896 ACTCGAGAGTGATGATCTTCCCTGTCACGGTCTTCACAAAAATCTGCATCTT 14845 >seq512960 Length=5958 Score = 107 bits (118), Expect = 4e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGA 192368 ||||| | ||| | || || | ||| ||||| | ||| ||| || || || || ||||| Sbjct 4554 CCACCACGAAGTCTCAACACAAGATGAAAAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 4496 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || ||| |||| | || ||| || ||||||||||| | ||| || || ||| | || Sbjct 4495 CAAAGTACGTCCATCTTGCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAAGAGG 4436 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| |||| || || || |||||||| ||| | |||||| | | || Sbjct 4435 AATTCCTTCCTTATTCTGGATCTTGGCCTTTACATTTTCTATGGTATCTGAGGGCTTGAC 4376 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| ||||| || || || | || || | ||| |||||||| || Sbjct 4375 CTCGAGAGTGATGGTCTTCCCCGTCAGAGTCTTCACAAAAATCTGCATCTT 4325 >seq13283 Length=25003 Score = 107 bits (118), Expect = 4e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGA 192368 ||||| | ||| | || || | ||| ||||| | ||| ||| || || || || ||||| Sbjct 7249 CCACCACGAAGTCTCAACACAAGATGAAAAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 7191 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || ||| |||| | || ||| || ||||||||||| | ||| || || ||| | || Sbjct 7190 CAAAGTACGTCCATCTTGCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAAGAGG 7131 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| |||| || || || |||||||| ||| | |||||| | | || Sbjct 7130 AATTCCTTCCTTATTCTGGATCTTGGCCTTTACATTTTCTATGGTATCTGAGGGCTTGAC 7071 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| ||||| || || || | || || | ||| |||||||| || Sbjct 7070 CTCGAGAGTGATGGTCTTCCCCGTCAGAGTCTTCACAAAAATCTGCATCTT 7020 >seq11610 Length=252271 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| || || | || | || | ||| | |||||| ||| || || ||| Sbjct 43552 ATCCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCA 43611 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| ||||| || |||||||| || ||||| || || || Sbjct 43612 GACAGGGTGCGCCCATCTTCCAGCTGTTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGA 43671 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || || || ||||| || | || | || Sbjct 43672 GGGATGCCTTCTTTTTCTTGGATCTTCCCCTTGACATTCTCGATGGTGTCACTAGGCTCC 43731 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || ||||| |||||||||||||| | ||||| | ||| ||||||||| Sbjct 43732 ACCTCCAGAGTGATGGTTTTACCAGTCAGGGTTTTTACAAAGATCTGCATT 43782 >seq2274 Length=301413 Score = 105 bits (116), Expect = 1e-17 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || |||| ||| | ||| | ||| ||| || || || || |||| Sbjct 270432 ACCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAG 270490 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || || |||| |||| ||| || |||| |||||| | ||| || || ||||| | Sbjct 270491 ACAAAGTATGTCCATCTTCCAGTTGCTTGCCAGGAAAGATCAGTCTTTGCTGGTCAGGAG 270550 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||||||||| || || || |||||||| ||| | ||| | | | | Sbjct 270551 GAATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCTAGGGCTTGA 270610 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || ||||| |||||||| || | || || | ||| |||||||| || Sbjct 270611 CCTCGAGAGTGATGGTTTTCTTCGTCAGGGTCTTCACAAAAATCTGCATCTT 270662 >seq2656 Length=305558 Score = 104 bits (114), Expect = 5e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 192325 AATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATC 192383 || |||| ||| | ||| | ||| ||| || ||||| || ||||| || || | | |||| Sbjct 78836 AACACTAGATGAAGAGTGGACTCCTTTTGA-ATATTGTAGTCAGACAAAGTACATCCATC 78778 Query 192384 ATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATC 192443 || | ||| || ||||||||||| | ||| || || ||||| || |||||||| ||||| Sbjct 78777 TTCTAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATC 78718 Query 192444 TTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGT 192503 || | || |||||||| ||| | ||| || | || || || ||||| ||||| Sbjct 78717 CTGGGTCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACCTCAAGAGTGATGGT 78658 Query 192504 TTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || | | || || | ||| |||||||| || Sbjct 78657 CTTCCCCATCAGGGTCTTCACAAAAATCTGCATCTT 78622 >seq8567 Length=100185 Score = 95.1 bits (104), Expect = 2e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| |||| ||| || ||||||||||| | ||| || ||||| || || |||||||| | Sbjct 93411 CATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCGGGAGGAATTCCTTCGT 93470 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 ||||||| || || |||||||| ||| | |||||| | || ||||| |||| | Sbjct 93471 TATCTTGGATCTTGGCCTTTACATTTTCTATTGCATCTGAGGGTTTGACTTCAGGAGTGA 93530 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||| || | || | || || || || |||||||| || Sbjct 93531 TGGACTTCCTTGTCAGGGTCTTCATGAAAATCTGCATCTT 93570 >seq3115 Length=1228732 Score = 89.7 bits (98), Expect = 1e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 192358 TTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGT 192417 || || ||||| || || | | |||| |||| ||| || ||||||||||| | ||| || Sbjct 1131643 TTGTAGTCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGC 1131702 Query 192418 TGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCT 192477 || ||||| | |||||||| ||||| || || || |||||||| ||| | ||| Sbjct 1131703 TGGTCAGGAGAAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCC 1131762 Query 192478 GACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || | || || || | ||| ||||| | | |||| || || || || |||||||| Sbjct 1131763 GAGGGCTCGACCTCGATAGTGATGGTCTCCACTGTTAGGGTCTTCATGAAAATCTGCATC 1131822 Query 192538 TT 192539 || Sbjct 1131823 TT 1131824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 978006964933950