Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq311227 118 2e-21 seq59220 113 8e-20 seq2274 104 4e-17 seq11610 87.8 3e-12 >seq311227 Length=303 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| |||| |||||||||||| | ||| ||||| ||||| || || Sbjct 215 ATTCCTCCTCTCAGTCTTAATACTAAATGGAGTGTACTTTCTTTTTGGATATTGTAGTCG 156 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || | | || || || |||||||||||||| ||||| | || || || ||| Sbjct 155 CTCAGTGTTCTTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGCTGATCTGGT 96 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| |||||||| || || ||| ||||| ||| || ||||| | |||| Sbjct 95 GGAATTCCTTCCTTATCTTGGATCTTTGCTTTCACATTCTCTATTGTGTCTGATGGTTCT 36 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTT 172054 ||||| | || || ||||| || || || ||||| Sbjct 35 ACTTCCAAGGTTATTGTTTTTCCGGTCAAAGTTTT 1 >seq59220 Length=24887 Score = 113 bits (124), Expect = 8e-20 Identities = 169/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || |||| ||| | ||| | ||| || ||| || Sbjct 15084 TTTCTTAGCACCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCATTTTGAATGTT 15025 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| ||| || |||||||| || | ||| || | Sbjct 15024 GTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTA 14965 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 |||||| || |||||||||||||| || || || |||||||| ||| ||||| || Sbjct 14964 GTCAGGAGGAATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGA 14905 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | || | || ||||| ||| | || || || | || || | || |||||||| || Sbjct 14904 GGGCTCGAACTCGAGAGTGATGATCTTCCCTGTCACGGTCTTCACAAAAATCTGCATCTT 14845 >seq2274 Length=301413 Score = 104 bits (114), Expect = 4e-17 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || |||| ||| | ||| | ||| || ||| || Sbjct 270423 TTTCTTAGCACCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTT 270482 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| || | || |||| ||| || |||| ||| || | ||| || || Sbjct 270483 GTAGTCAGACAAAGTATGTCCATCTTCCAGTTGCTTGCCAGGAAAGATCAGTCTTTGCTG 270542 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 |||||| || |||||||||||||| || || || |||||||| ||| ||||| | Sbjct 270543 GTCAGGAGGAATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCTA 270602 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | | || || ||||| |||||||| || | || || | || |||||||| || Sbjct 270603 GGGCTTGACCTCGAGAGTGATGGTTTTCTTCGTCAGGGTCTTCACAAAAATCTGCATCTT 270662 >seq11610 Length=252271 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| || || | || | || | ||| | |||||| || || || || Sbjct 43552 ATCCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCA 43611 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || |||| ||||| || ||||| || || ||||| ||||| || Sbjct 43612 GACAGGGTGCGCCCATCTTCCAGCTGTTTGCCTGCAAAGATCAACCTCTGCTGGTCTGGA 43671 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| || || || ||||| || || || | || Sbjct 43672 GGGATGCCTTCTTTTTCTTGGATCTTCCCCTTGACATTCTCGATGGTGTCACTAGGCTCC 43731 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || ||||| |||||||||||||| | ||||| | || ||||||||| Sbjct 43732 ACCTCCAGAGTGATGGTTTTACCAGTCAGGGTTTTTACAAAGATCTGCATT 43782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899329812786600