Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq11610 127 2e-24 seq311227 116 3e-21 seq2274 113 4e-20 seq59220 105 6e-18 seq512960 100 3e-16 seq13283 100 3e-16 seq2656 100 3e-16 seq2312 100 3e-16 seq8567 95.1 1e-14 seq101 86.0 6e-12 seq17057 84.2 2e-11 >seq11610 Length=252271 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || | |||||||| || || || || || || || ||| Sbjct 43326 GATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 43267 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||||||||| || || || || || || || Sbjct 43266 TGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 43207 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||| |||||||||||||| ||| | | | | |||| || || || Sbjct 43206 GCAGAGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 43147 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || || || || || || |||||||| |||| ||| | ||||| Sbjct 43146 CATCCAGAAAGAGTCTACTCTGCACTTGGTCCTGCGCTTGAGGGGAGG 43099 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||||||| | ||||| || || |||||||| || || || || || || | Sbjct 43784 ACAATGCAGATCTTTGTAAAAACCCTGACTGGTAAAACCATCACTCTGGAGGTGGAGCCT 43725 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || ||||||||||| |||||||| || ||||| || Sbjct 43724 AGTGACACCATCGAGAATGTCAAGGGGAAGATCCAAGAAAAAGAAGGCATCCCTCCAGAC 43665 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | ||||||||||| || ||||||||||| ||| | | | | |||| || || Sbjct 43664 CAGCAGAGGTTGATCTTTGCAGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTAC 43605 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| || || || || || || ||| |||| Sbjct 43604 AACATCCAGAAAGAGTCCACTCTGCACCTGGT 43573 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || | |||||||| || || || || || || || ||| Sbjct 43554 GATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 43495 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||||||||| || || || || || || || Sbjct 43494 TGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCA 43435 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||| |||||||||||||| ||| | | | | |||| || || || Sbjct 43434 GCAGAGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 43375 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || || || || || || ||| |||| Sbjct 43374 CATCCAGAAAGAGTCCACTCTGCACCTGGT 43345 >seq311227 Length=303 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 ||||| | ||||| ||||| || || | ||||||||| | | |||||| |||| | Sbjct 1 AAAACTTTGACCGGAAAAACAATAACCTTGGAAGTAGAACCATCAGACACAATAGAGAAT 60 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || ||| |||||||||||| || |||||||| || || ||||| |||||||| || ||| Sbjct 61 GTGAAAGCAAAGATCCAAGATAAGGAAGGAATTCCACCAGATCAGCAACGTTTAATATTT 120 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 || || |||||| | || ||| |||| || || || || || ||||| ||| Sbjct 121 GCTGGTAAACAGTTAGAAGATGGAAGAACACTGAGCGACTACAATATCCAAAAAGAAAGT 180 Query 24899 ACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || || || || || || | ||||| Sbjct 181 ACACTCCATTTAGTATTAAGACTGAGAGGAGG 212 >seq2274 Length=301413 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || || || || ||||| || || ||||| || | || Sbjct 270660 GATGCAGATTTTTGTGAAGACCCTGACGAAGAAAACCATCACTCTCGAGGTCAAGCCCTA 270601 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| |||||| ||||| |||||||| || ||||||||||| ||||| || || Sbjct 270600 GGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGACCA 270541 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAAC-ATGTCAGATTATA 24881 ||| | |||||||| | || || || ||||| || | || | || |||| || || | Sbjct 270540 GCAAAGACTGATCTTTCCTGGCAAGCAACTGGAAGA-TGGACATACTTTGTCTGACTACA 270482 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||||| || || || || | |||||| || | || || || Sbjct 270481 ACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACTTCGTGGTGG 270433 >seq59220 Length=24887 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || || | || || || | || || ||||| | || || | Sbjct 14847 GATGCAGATTTTTGTGAAGACCGTGACAGGGAAGATCATCACTCTCGAGTTCGAGCCCTC 14906 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| |||||| ||||| |||||||| || ||||||||||| ||||| || | Sbjct 14907 GGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGACTA 14966 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | |||||||||| || || || ||||| ||| | | |||| || || || Sbjct 14967 GCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAA 15026 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||| || || || || || | |||||| || | || || || Sbjct 15027 CATTCAAAATGAGTCCACTCTTCATCTAGTGTTGAGACTTCGTGGTGG 15074 >seq512960 Length=5958 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || || || || || || || || || ||||| || | || | Sbjct 4327 GATGCAGATTTTTGTGAAGACTCTGACGGGGAAGACCATCACTCTCGAGGTCAAGCCCTC 4386 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || |||||| ||||| |||||||| | || |||||||| |||| || || Sbjct 4387 AGATACCATAGAAAATGTAAAGGCCAAGATCCAGAATAAGGAAGGAATTCCTCTTGACCA 4446 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | |||||||||| || || || ||| | ||| | | |||| || || || Sbjct 4447 GCAAAGACTGATCTTTGCTGGCAAGCAACTGCAAGATGGACGTACTTTGTCTGACTACAA 4506 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 |||||||||||| || || | || | |||||| || | || || |||| Sbjct 4507 CATTCAAAAGGAGTCCACTTTTCATCTTGTGTTGAGACTTCGTGGTGGCG 4556 >seq13283 Length=25003 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || || || || || || || || || ||||| || | || | Sbjct 7022 GATGCAGATTTTTGTGAAGACTCTGACGGGGAAGACCATCACTCTCGAGGTCAAGCCCTC 7081 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || |||||| ||||| |||||||| | || |||||||| |||| || || Sbjct 7082 AGATACCATAGAAAATGTAAAGGCCAAGATCCAGAATAAGGAAGGAATTCCTCTTGACCA 7141 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | |||||||||| || || || ||| | ||| | | |||| || || || Sbjct 7142 GCAAAGACTGATCTTTGCTGGCAAGCAACTGCAAGATGGACGTACTTTGTCTGACTACAA 7201 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 |||||||||||| || || | || | |||||| || | || || |||| Sbjct 7202 CATTCAAAAGGAGTCCACTTTTCATCTTGTGTTGAGACTTCGTGGTGGCG 7251 >seq2656 Length=305558 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || || || | || || || || || || || || || || | Sbjct 78624 GATGCAGATTTTTGTGAAGACCCTGATGGGGAAGACCATCACTCTTGAGGTCGAGCCCTC 78683 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| |||||| ||||| |||| ||| || || |||||||| ||||| || || Sbjct 78684 GGATACAATAGAAAATGTAAAGGCCAAGACCCAGGATAAGGAAGGAATTCCTCCTGACCA 78743 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | |||||||||| || || || || || ||| | | |||| || || || Sbjct 78744 GCAAAGACTGATCTTTGCTGGCAAGCAACTAGAAGATGGATGTACTTTGTCTGACTACAA 78803 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 ||||||||||| || || || || | |||||| || | | || |||| Sbjct 78804 TATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACTTCATGGTGGCG 78853 >seq2312 Length=925560 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || || || || || || || || || ||||| || || || | Sbjct 16417 GATGCAGATTTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTCGAGGTGGAGCCCTC 16476 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| ||||| ||||| || ||||| || || |||||||| ||| | | || Sbjct 16477 GGATACAACAGAAAATGTAAAGGCCAAAATCCAGGATAAGGAAGGAATTCCTTCTTACCA 16536 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | ||||||| || || || || ||||| ||| | | |||| || || || Sbjct 16537 GCAAAGACTGATCTTAGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAA 16596 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 |||||||||||| || || || || | |||||| || | || || |||| Sbjct 16597 CATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACTTCGTGGTGGCG 16646 >seq8567 Length=100185 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || || || || || || | || | || || | ||||| || || | Sbjct 93568 GATGCAGATTTTCATGAAGACCCTGACAAGGAAGTCCATCACTCCTGAAGTCAAACCCTC 93509 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || |||||| ||||| ||||||||||| || |||||||| ||||||||||| Sbjct 93508 AGATGCAATAGAAAATGTAAAGGCCAAGATCCAAGATAACGAAGGAATTCCTCCCGATCA 93449 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 ||| | |||||||||| || || || ||||| ||| Sbjct 93448 GCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGAT 93412 >seq101 Length=221765 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || || || | || || || || | ||| | || || || Sbjct 70806 GATGCAGATTTTCGTGAAGACCCTGATGGGGAAGACCATCATTCTCAAGGTTGAGCCCTT 70747 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| ||||| ||||| |||||||| || || ||||| || ||||| || || Sbjct 70746 GGATACAAAAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGGATTCCTCCTGACCA 70687 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | |||||||||| || || || ||||| ||| | | |||| || || || Sbjct 70686 GCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAA 70627 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 |||||||||||| | || || || | |||||| || Sbjct 70626 CATTCAAAAGGAGCCCACTCTTCATCTAGTGTTGAGA 70590 >seq17057 Length=148899 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || ||||| || || || || || || || || ||| Sbjct 116995 ATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 117054 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || ||||| || || || || || Sbjct 117055 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 117114 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||||||||| || |||||||| ||| | | | || ||||| ||| Sbjct 117115 CAGCGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 117174 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || || || || || || ||| |||| Sbjct 117175 ATCCAGAAAGAGTCTACCCTGCACCTGGT 117203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447011636241560