Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq311227 132 8e-26 seq17511 84.2 3e-11 >seq311227 Length=303 Score = 132 bits (146), Expect = 8e-26 Identities = 166/225 (74%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 146046 AAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAACGATACTATTCAAAA 146104 ||||| || || ||||||||||| || | || |||||| ||| | || || || | || Sbjct 1 AAAACTTTGACCGGAAAAACAATAACCTTGGAAGTAGAACCATCA-GACACAATAGAGAA 59 Query 146105 TGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTT 146164 ||| ||| || || ||| ||| ||||| |||||||| ||||| ||| | | || || Sbjct 60 TGTGAAAGCAAAGATCCAAGATAAGGAAGGAATTCCACCAGATCAGCAACGTTTAATATT 119 Query 146165 TGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATC 146224 ||| |||||||| ||||| ||| ||||| | | || || ||||| ||||||||| Sbjct 120 TGCTGGTAAACAGTTAGAAGATGGAAGAACACTGAGCGACTACAATATCCAAAAAGAAAG 179 Query 146225 GACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 || |||||||||||||| || | |||||||| | ||||||| Sbjct 180 TACACTCCATTTAGTATTAAGACTGAGAGGAGGAATGCAAATATT 224 >seq17511 Length=90491 Score = 84.2 bits (92), Expect = 3e-11 Identities = 303/446 (68%), Gaps = 46/446 (10%) Strand=Plus/Plus Query 107138 TATTGTAATAACAAA----ATATATA-AATATCTGAATAAAGTATTTCCTTATTATTATT 107192 |||| |||||| | | ||||||| ||||| || ||| | ||| | | ||||| || Sbjct 69956 TATTATAATAATATATATTATATATATAATATATGTATATATTATATA-TAATTAT-ATA 70013 Query 107193 CAATACTATTTTTAATTTGGGATTATAACTAGTtatatcatataattgtatatcatattt 107252 |||| ||| | ||||| |||||| || ||||| ||||||| ||||| |||| Sbjct 70014 TAATA-TATATATAATTATATATTATATATACATATAT--TATAATTATATAT-ATATAA 70069 Query 107253 ttcaacatta---ataatgttatgtctatatattgatatatgtaaatttttatctaatat 107309 | | |||| ||||| || | |||||||| |||||| ||| | | || |||| Sbjct 70070 TATATAATTATATATAATAATAATTATATATATT-ATATATATAATATATAATTATATAT 70128 Query 107310 tagtatttcattataattaaatatatttt-tgtataatattggctgtaatttattaaata 107368 | ||| || ||||||| |||||| | | |||| ||| | |||| ||| ||||| Sbjct 70129 AATAATTATAT-ATAATTATATATATATAATATATATAATTATATATAATATAT-AAATA 70186 Query 107369 ttaaattatcatctatttCTAAGGTATCATCTTTGatataataaattatataaagtat-t 107427 | ||| || || |||| || ||| || ||||||| | |||||| | ||| | Sbjct 70187 TATAAT-ATAATATATTAATA---TATTAT-----ATATAATTATATATATATAATATAT 70237 Query 107428 aattcatttctcattcgaatat-tattaataatatttaaatatatagattctggcatata 107486 |||| || | | || ||||| ||||| ||||||| ||||||| | | | |||| Sbjct 70238 AATTTATATAT-AT---AATATATATTA-TAATATT---ATATATATAATAT---ATATT 70286 Query 107487 atctttatgtgataatatacatctaat-atatgatataGATGGATTTTCATTTAGAAATT 107545 || | ||| ||||| || || |||| |||| ||||| || || || || | ||| Sbjct 70287 ATATATATAATATAAT-TATATATAATTATATTATATATATA-ATATTA---TATATATT 70341 Query 107546 TATTTATTTTATAATATATTGAATAA 107571 || ||| ||||||||||| | ||| Sbjct 70342 AATATATAATATAATATATTAATTAA 70367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 781123368566840