Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq11610 122 7e-23 seq59220 105 5e-18 seq2312 96.9 3e-15 seq2274 96.9 3e-15 seq512960 87.8 1e-12 seq13283 87.8 1e-12 >seq11610 Length=252271 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| ||||| ||||| || || || || ||||| || ||||| || || | Sbjct 43099 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAC 43158 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || ||||| || ||| | ||||| || ||||| || || || Sbjct 43159 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGG 43218 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| |||||||| | || |||||| | || | |||||| | || || Sbjct 43219 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 43278 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || || || ||||| || || || |||||||| Sbjct 43279 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 43325 >seq59220 Length=24887 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || ||||||||||| || || | | || || ||| Sbjct 15060 CAACACTAGATGAAGAGTGGACTCATTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 15001 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| |||||||| || || ||||| || ||||| || Sbjct 15000 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTAGTCAGGAGGAATTCCTTCTTTATC 14941 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| || || || | || | || ||||| || | Sbjct 14940 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGAACTCGAGAGTGATGAT 14881 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | ||| || ||||| |||||||| || Sbjct 14880 CTTCCCTGTCACGGTCTTCACAAAAATCTGCATCTT 14845 >seq2312 Length=925560 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || ||||||||||| || || | | || || ||| Sbjct 16630 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 16571 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| |||||||| | |||| ||||||||| | | ||||| || || || || Sbjct 16570 TTCCAGTTGCTTGCCAGCTAAGATCAGTCTTTGCTGGTAAGAAGGAATTCCTTCCTTATC 16511 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | ||| || ||| ||||| || || || | || || || ||||| || || Sbjct 16510 CTGGATTTTGGCCTTTACATTTTCTGTTGTATCCGAGGGCTCCACCTCGAGAGTGATGGT 16451 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | ||| || || || |||||||| || Sbjct 16450 CTTCCCTGTCAGGGTCTTCACGAAAATCTGCATCTT 16415 >seq2274 Length=301413 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || ||||||||||| || || | | || | ||| Sbjct 270447 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATC 270506 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||| | | |||| ||||||||| || || ||||| || ||||| || Sbjct 270507 TTCCAGTTGCTTGCCAGGAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCTTTATC 270566 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| || || | | | || || ||||| || || Sbjct 270567 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCTAGGGCTTGACCTCGAGAGTGATGGT 270626 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||| || | ||| || ||||| |||||||| || Sbjct 270627 TTTCTTCGTCAGGGTCTTCACAAAAATCTGCATCTT 270662 >seq512960 Length=5958 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | ||||| ||||| || ||||||||||| || || | | || || ||| Sbjct 4540 CAACACAAGATGAAAAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 4481 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 | ||||| ||||||||| | |||| ||||||||| || | ||||| || || || | Sbjct 4480 TTGCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAAGAGGAATTCCTTCCTTATT 4421 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| || || || | | || || ||||| || || Sbjct 4420 CTGGATCTTGGCCTTTACATTTTCTATGGTATCTGAGGGCTTGACCTCGAGAGTGATGGT 4361 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | || || ||||| |||||||| || Sbjct 4360 CTTCCCCGTCAGAGTCTTCACAAAAATCTGCATCTT 4325 >seq13283 Length=25003 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | ||||| ||||| || ||||||||||| || || | | || || ||| Sbjct 7235 CAACACAAGATGAAAAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 7176 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 | ||||| ||||||||| | |||| ||||||||| || | ||||| || || || | Sbjct 7175 TTGCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAAGAGGAATTCCTTCCTTATT 7116 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| || || || | | || || ||||| || || Sbjct 7115 CTGGATCTTGGCCTTTACATTTTCTATGGTATCTGAGGGCTTGACCTCGAGAGTGATGGT 7056 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | || || ||||| |||||||| || Sbjct 7055 CTTCCCCGTCAGAGTCTTCACAAAAATCTGCATCTT 7020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 382809906342957