Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq11610 109 7e-19 seq6772 105 9e-18 seq4622 105 9e-18 seq5999 104 3e-17 seq3169 104 3e-17 seq753 104 3e-17 seq6582 87.8 2e-12 seq491727 82.4 1e-10 seq17440 82.4 1e-10 >seq11610 Length=252271 Score = 109 bits (120), Expect = 7e-19 Identities = 74/82 (90%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 ||||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||| Sbjct 54838 AGTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 54779 Query 11787 TCCCCGACGAGGAGGGAGGTTA 11808 ||||||||| ||||| | |||| Sbjct 54778 TCCCCGACGGGGAGGCATGTTA 54757 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 || ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 54839 TAGTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 54780 Query 8715 TTCCCCGACGAGGAG 8729 |||||||||| |||| Sbjct 54779 TTCCCCGACGGGGAG 54765 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 57774 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 57715 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 57714 CCCGACGGGGAG 57703 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 57774 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 57715 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 57714 CCCGACGGGGAGG 57702 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 57703 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 57762 Query 139413 TACTAACGAGGAT 139425 ||||||||||||| Sbjct 57763 TACTAACGAGGAT 57775 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 54765 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 54824 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 54825 TACTAACGAGGA 54836 >seq6772 Length=255489 Score = 105 bits (116), Expect = 9e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 27051 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 27110 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 27111 CCCCGACGGGGAG 27123 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 27052 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 27111 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 27112 CCCGACGGGGAG 27123 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 139350 CAACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCA 139409 || |||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||| Sbjct 27126 CATCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 27067 Query 139410 CTATACTAACGAGGA 139424 ||||||||||||||| Sbjct 27066 CTATACTAACGAGGA 27052 >seq4622 Length=626524 Score = 105 bits (116), Expect = 9e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 99746 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 99805 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 99806 CCCCGACGGGGAG 99818 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 99747 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 99806 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 99807 CCCGACGGGGAGG 99819 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| ||| ||||| | |||||||||||||||||||| Sbjct 152938 TTCCTCGTTAGTATAGTGGTGAGTATCCCCACCTGTCACGCGGGAGACCGGGGTTCGATT 152879 Query 8717 CCCCGACGAGGAG 8729 ||||| || |||| Sbjct 152878 CCCCGCCGGGGAG 152866 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 99818 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 99759 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 99758 TACTAACGAGGA 99747 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| ||| ||||| | ||||||||||||||||||||| Sbjct 152937 TCCTCGTTAGTATAGTGGTGAGTATCCCCACCTGTCACGCGGGAGACCGGGGTTCGATTC 152878 Query 11789 CCCGACGAGGAGG 11801 |||| || ||||| Sbjct 152877 CCCGCCGGGGAGG 152865 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 139350 CAACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCA 139409 || |||| || |||||| |||||||||||||||||| | |||| ||||||| | |||| Sbjct 152863 CACCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGTGGGGATACTCACCA 152922 Query 139410 CTATACTAACGAGGA 139424 ||||||||||||||| Sbjct 152923 CTATACTAACGAGGA 152937 >seq5999 Length=734475 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 28679 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 28738 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 28739 CCCGACGGGGAG 28750 Score = 96.9 bits (106), Expect = 4e-15 Identities = 66/73 (90%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 28679 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 28738 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 28739 CCCGACGGGGAGG 28751 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| | |||||||||||||||| | |||| |||||||| ||||||||| Sbjct 28750 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 28691 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 28690 TACTAACGAGGA 28679 >seq3169 Length=148348 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 128447 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 128388 Query 8718 CCCGACGAGGAGCAG 8732 ||||||| |||| || Sbjct 128387 CCCGACGGGGAGGAG 128373 Score = 102 bits (112), Expect = 1e-16 Identities = 69/76 (91%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 || ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 128450 CACTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 128391 Query 11786 TTCCCCGACGAGGAGG 11801 |||||||||| ||||| Sbjct 128390 TTCCCCGACGGGGAGG 128375 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 128376 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 128435 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 128436 TACTAACGAGGA 128447 >seq753 Length=255856 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 69195 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 69254 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 69255 CCCGACGGGGAG 69266 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 69195 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 69254 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 69255 CCCGACGGGGAGG 69267 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 69266 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 69207 Query 139413 TACTAACGAGGATTT 139427 |||||||||||| || Sbjct 69206 TACTAACGAGGAGTT 69192 >seq6582 Length=662759 Score = 87.8 bits (96), Expect = 2e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| ||||||| |||||||| ||| || Sbjct 570511 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACACGGGAAACCGGGGTGCGAGTC 570570 Query 8718 CCCGAC 8723 |||||| Sbjct 570571 CCCGAC 570576 Score = 86.0 bits (94), Expect = 8e-12 Identities = 60/67 (90%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| ||||| |||| ||||| ||||||| |||||||| ||| | Sbjct 570510 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACACGGGAAACCGGGGTGCGAGT 570569 Query 11788 CCCCGAC 11794 ||||||| Sbjct 570570 CCCCGAC 570576 Score = 84.2 bits (92), Expect = 3e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 139359 GTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTATACTAA 139418 |||||||| ||| |||||||| ||||||| |||| |||||||| | ||||||||||||| Sbjct 570576 GTCGGGGACTCGCACCCCGGTTTCCCGTGTGACAGGCGGGGATACTCACCACTATACTAA 570517 Query 139419 CGAGGA 139424 |||||| Sbjct 570516 CGAGGA 570511 >seq491727 Length=917 Score = 82.4 bits (90), Expect = 1e-10 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||||||||||||||| ||||| |||| ||||| | ||||||||||||||| ||||| Sbjct 353 TCCTCGTTAGTATAGTGGCGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTTGATTC 412 Query 8718 CCCGA 8722 |||| Sbjct 413 TCCGA 417 >seq17440 Length=19628 Score = 82.4 bits (90), Expect = 1e-10 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||||||||||||||| ||||| |||| ||||| | ||||||||||||||| ||||| Sbjct 15167 TCCTCGTTAGTATAGTGGCGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTTGATTC 15226 Query 8718 CCCGA 8722 |||| Sbjct 15227 TCCGA 15231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 648656988300880