Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq17057 136 4e-27 seq11610 125 7e-24 seq332959 105 6e-18 seq6593 100 3e-16 seq18533 86.0 6e-12 seq34337 84.2 2e-11 >seq17057 Length=148899 Score = 136 bits (150), Expect = 4e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 117192 GGTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 117134 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||||||||||||| || || ||||||||||| || |||||| || Sbjct 117133 CGGCAAAGATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCT 117074 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 117073 TCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 117014 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| || ||||| Sbjct 117013 TCTTCACGAAGATTTGCAT 116995 >seq11610 Length=252271 Score = 125 bits (138), Expect = 7e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || ||||| || || ||| | || || ||||| || ||| Sbjct 43357 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCC 43416 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | || ||||||||| || |||||||| |||||||| |||||| |||| Sbjct 43417 GCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTG 43476 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| |||||||||| || | ||||| ||| || ||||||| || Sbjct 43477 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAGGTC 43536 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 43537 TTCACGAAGATCTGCAT 43553 Score = 125 bits (138), Expect = 7e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || ||||| || || ||| | || || ||||| ||||| Sbjct 43585 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCT 43644 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | || ||||||||| |||||||||||||| || || |||||| |||| Sbjct 43645 GCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCTTCTTTTTCTTGGATCTTCCCCTTG 43704 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| | |||||||| || | |||| |||||| || ||||| ||| Sbjct 43705 ACATTCTCGATGGTGTCACTAGGCTCCACCTCCAGAGTGATGGTTTTACCAGTCAGGGTT 43764 Query 133644 TTTACGAAAATCTGCAT 133660 ||||| || |||||||| Sbjct 43765 TTTACAAAGATCTGCAT 43781 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||||||||| || ||||| || || ||| | || || ||||| || ||| Sbjct 43129 GTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCC 43188 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | || ||||||||| || |||||||| |||||||| |||||| |||| Sbjct 43189 GCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTG 43248 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||||| |||||||||| || | ||||| ||| || ||||||| || Sbjct 43249 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCGGTCAAGGTC 43308 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 43309 TTCACGAAGATCTGCAT 43325 >seq332959 Length=315 Score = 105 bits (116), Expect = 6e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 ||||||||||||||||| || || ||||||||||| || |||||| ||| | | | Sbjct 3 ATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 62 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 || | ||||| |||||||||| || | |||| ||| ||||||||||| || || ||| Sbjct 63 TCGATGGTGTCACTGGGCTCCACCTCCAGCGTGATGGTCTTGCCGGTCAGGGTCTTCACG 122 Query 133650 AAAATCTGCAT 133660 || |||||||| Sbjct 123 AAGATCTGCAT 133 Score = 95.1 bits (104), Expect = 1e-14 Identities = 113/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 164 GGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 222 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||||||||||||| || || ||||||||||| || |||||| || Sbjct 223 CGGCAAAGATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCT 282 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCAC 133612 | | | ||| | ||||| |||||||||| Sbjct 283 TCACGTTCTCGATGGTGTCACTGGGCTCCAC 313 >seq6593 Length=173140 Score = 100 bits (110), Expect = 3e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||||||| |||||||| || | ||| | | ||| |||||| |||| Sbjct 88397 GGTGGACTCTTTCTGGATATTGTAGTCTGACGGAGTGCAGCCATTCTCCAGCTGCATGCC 88456 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581 | | |||| || ||||| |||| || || ||||| |||||||| ||| ||| || | Sbjct 88457 TGTGAAAATCAGACGCTGTCGGTCAGGCGGAATGCCCTCCTTGTCTTGGAT-TTTGGCTT 88515 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| ||||| ||||||| || || | ||| | ||| ||||| |||| Sbjct 88516 TGACATTCTCAGTGGTGTCACTGGGCTCGACCTCAAGGGTAATGGTCTTGCCCATCAGGA 88575 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 88576 TCTTCACAAAGATCTGCAT 88594 >seq18533 Length=223514 Score = 86.0 bits (94), Expect = 6e-12 Identities = 144/204 (71%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 133460 TATGGTGGACTCTTTCTGTATATTGTAATC--GCCCATCGTGGACGAGTCCTCGAGCTGC 133517 || ||||||||||||||| |||||||| || | || |||| | | ||| ||||| Sbjct 51687 TAGGGTGGACTCTTTCTGGATATTGTATTCTGACAGATTGTGGCC--ATTCTCCAGCTGT 51744 Query 133518 TTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTT 133577 ||||| | |||| || | ||| | || || |||| ||| ||| |||| ||| ||| Sbjct 51745 TTGCCAATGAAAATCAGACTCTGTAGATCAGGTGGGAAGCCCTCCCTGTCTTGGAT-TTT 51803 Query 133578 TGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 || |||| | |||| ||||| ||||||| || || |||| ||| || || || Sbjct 51804 GGCTTTGACATTCTCAGTAGTGTCACTGGGCTCAACCTCACAGGTGGTGGTCTTCCCTGT 51863 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || || |||||||| Sbjct 51864 TAGGGTTTTCACAAAGATCTGCAT 51887 >seq34337 Length=37708 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 130 GGTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 72 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 | || | ||||||||||||||||| || || ||||||||||| || |||||| Sbjct 71 CAGCAAAGATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTT 17 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 480319794551480