Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq7025 273 3e-68 seq9486 203 4e-47 >seq7025 Length=582757 Score = 273 bits (302), Expect = 3e-68 Identities = 668/1005 (66%), Gaps = 17/1005 (2%) Strand=Plus/Plus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| ||| || | |||||||| || || | ||| ||| Sbjct 249248 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAATGTCCG 249307 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 ||||| ||||| || |||| ||| ||| | | || | ||| || | ||||| | Sbjct 249308 TGTCGAATTTGTTGGCAAACAAGTGGTGCACGCGC---AACAGCCAGTTCAAGTCCCCAG 249364 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 ||| || ||||||||||| |||||||| ||||||||||||||||| || |||| || | Sbjct 249365 CTCCAAAAACGCACACGGAGCGCACGTGGACGCCGCTGCACGGCGGGTAGGGGGCGCCCT 249424 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | || || || ||| |||| ||||| ||||| ||||| | || || |||||||| | Sbjct 249425 TGGAAACGTCTCCTTCGAAGTACTGCCATTTAACAAACCTGGCAATCGCTTGCATGTCAG 249484 Query 162299 AGGTGTCGTACTTGTACACTGACGG-CACGGCTCCAGGAACACCCGGCAGTCTCTGTAGA 162357 | ||||||||||| | || | || || | || || || | || | ||||| | | Sbjct 249485 ACGTGTCGTACTTAT-GGCTCAAGGACAGTGACCCTGGGACTTCGGGGATCCTCTGAATA 249543 Query 162358 GTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTG 162417 || ||||| || | |||||||| || || || || || | ||||||||| |||| | Sbjct 249544 GTGGCCCAGAGATACTCGTCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTTTGG 249603 Query 162418 ACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477 | ||| | | || | ||| || || ||| | || | ||| || || || Sbjct 249604 ATATTTTGGTTCTGGAGCACGTACTCCACATACTCCCTACTGACCACAAAATAGGCACTG 249663 Query 162478 CCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACC 162537 || ||||||| ||| | | ||| || | |||||| |||||||| | | Sbjct 249664 CCTGAAAACAGAGGTGTTTCAAGAGGTGGATGTATTTTGTCAGTCCCCGTGTTTGTCAGC 249723 Query 162538 ATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGT 162597 |||| | || || | | ||| |||||| | | ||| ||| || || | Sbjct 249724 TTTCCATTCACAACTTCATAATGCTTTTGCCACCTTTCTTTTTTA-TGG--GATGGCATT 249780 Query 162598 ---TCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGA 162654 || || ||||| | || |||| ||| ||| |||| | || || || || Sbjct 249781 CTCTCCGTTTCTAGGTTATTCTCACCCATCAACAACTTGAGCTTCCTGACAATTTCCAGG 249840 Query 162655 TTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTG 162714 ||||| |||| ||||| || | ||||||||||| || | || ||||| | | | Sbjct 249841 TTGGTTTTAATAGGAAAATCCATACCGCAGAGATTTATCAGGTACTTCCAGTCTGCATTC 249900 Query 162715 AGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTAC 162774 | | ||| || ||||| | ||||| || || ||||| || || ||||| ||||| ||| Sbjct 249901 ATCCGGTAGAGGTCCTGCATGCAGTTAAGGTCAGCCTGAACCCGGCTCCAGGACGCATAC 249960 Query 162775 ACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCAT- 162833 || |||||||||| | | |||| ||||||||||| ||| || || || || || Sbjct 249961 ACCACGCTCTCCAGCTGACTGGCCACAAAGACATTACTGAAGCAGGATGTGATGCCAATA 250020 Query 162834 --CACGGCCAGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891 | |||| || | || || | ||| | || ||||| | || || | |||| Sbjct 250021 GCTGCAGCCAAAAAGGATTTC---TCTGATTTTGTGTCCACGTGAATACAATAGAAATTC 250077 Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951 ||||| |||||||||||||| | || || | ||| || || || || || ||||| Sbjct 250078 TGAGGCATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACT 250137 Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTG 163011 |||||||| ||||| || ||||| ||||| || ||| || | || ||| || ||| Sbjct 250138 ATAGAATATGCTATTGGAAACTCCGCCTCTTCTTTACTAAGTGGTTCTATAATATATTTG 250197 Query 163012 CGGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAACGTAG 163056 || | | | | || || ||||| || | |||||||| | |||| Sbjct 250198 CGCTTCTTGATGAAAGCAGCACAATCACCAGTCATGTTTATGTAG 250242 >seq9486 Length=320400 Score = 203 bits (224), Expect = 4e-47 Identities = 238/322 (74%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| | || || || ||||| || ||||| |||||||| | | Sbjct 9224 CAAAGAGAGTGAGGCAGGCTATTCCTGAGATCTTTCCAGAACCAAAGGTATTAAAGAGGC 9283 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| | || ||||||| |||||| ||||| || || | || || || ||| Sbjct 9284 ACTTGTAACACGCCTCATCCTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGA 9343 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || || || || | | ||||||||| | ||||||||| ||||| || || | Sbjct 9344 GTCCCAGCTGGGTGATATTTATCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCATGGT 9403 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 |||||||| | ||| ||||||||| ||||| |||||| || || ||||| || || | Sbjct 9404 TCTCGCTGTAGGTGATCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAA 9463 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | |||||||| | | |||| ||||| ||||||||||||||||||||||||| | Sbjct 9464 TCAAAACTTCCTGGGGATTTTGCAGAGAACATCTTAAAGAAGCAGGTGTGTTCAGCAGCC 9523 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||| | || || || ||||| Sbjct 9524 CTCTTACATCCTGGGTCACCAC 9545 Score = 122 bits (134), Expect = 1e-22 Identities = 176/248 (71%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 ||||||| ||| ||| || |||||||||| ||||| || | ||| ||||| |||| Sbjct 6630 ACAGTTTCCCTGTAGTCAGTCACAGTCCCCAGGTGTAGTACCTGGCAGATCACATCCT-- 6687 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| || || || || ||||| | || || ||||| || |||||||| || || Sbjct 6688 -TCCCCACCTGTCTCTTGGGGTCTTTGATCTGGAGGATGCTGGTGACAGATGTTGTTCCA 6746 Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682 || ||||| ||| | | ||||| || || || || || | | |||||||| | Sbjct 6747 TTGGGATGTGAGACGATCTCGGTACTGTTCTCAATCCCTGACTCAGAGACTTTCCAGGAG 6806 Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAAC 171742 || | ||| ||||| | |||| | ||||||||||| || |||| |||||| | || Sbjct 6807 ATCATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTAGGTGATCTTCAGATAAT 6866 Query 171743 TCATAGTG 171750 | |||||| Sbjct 6867 TTATAGTG 6874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574721525019200