Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq52311 260 3e-64 seq4890 89.7 1e-12 >seq52311 Length=1231 Score = 260 bits (288), Expect = 3e-64 Identities = 479/696 (69%), Gaps = 7/696 (1%) Strand=Plus/Plus Query 110469 CATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTT 110528 ||||| || || || ||||||| | || || || |||| || | || || ||| Sbjct 431 CATGCAACACCAACATTATTTAATTCTGGTACAAAAAATCCACAAATGTCATCATGTTTT 490 Query 110529 CTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCT 110588 | ||| || | |||||||| | ||||| || | || | | ||| || ||| Sbjct 491 TTATTAGATATGCAAGATGATTCATTAGAAGGAATATTTGCAACATTAAAACAATGTGCA 550 Query 110589 CTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACG-TTCATGATATTCGCTCAAAAGG 110647 |||| ||| | ||||||||||| ||| | ||||| | ||| | ||| || Sbjct 551 TTTATAAGTAAGTGTGCAGGAGGAATTGG-ATTATCTATTCATAAAATTAGAGCAAGTGG 609 Query 110648 AGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTT 110707 | || |||| | | | || || || | |||| | || |||||||||| | | || Sbjct 610 ATCATATATTAGAGGAACTAATGGAATATCTAATGGAATAGTACCAATGTTAAAAATATT 669 Query 110708 CAACGACACTGCAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTAT 110764 || |||||||| ||||| | ||||| ||| || ||||| || |||||||| || Sbjct 670 TAATTCAACTGCAAAGTATGTAGACCAAGGAGGTGGAAAAAGAAAGGGTTCATTTGCAAT 729 Query 110765 CTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGG 110824 ||| | ||||| |||||| ||||||||||| || | ||||| | | |||||||| || Sbjct 730 ATATTTAGAACCATGGCATGCAGATATATTTAAACTTTTAGATTTAAGAAAAAATCATGG 789 Query 110825 ATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCAT 110884 |||||| ||||||| | ||||||||||||||| | ||||| |||||||||| || Sbjct 790 TCATGAAGATTTAAGAGCAAGAGATTTATTTTATGCATTATGGATACCAGATTTATTTAT 849 Query 110885 GAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCT 110944 |||| | || ||| |||| ||| | | |||||||| || | | || | Sbjct 850 GAAAAGAGTAGAAGCAAATAAACAATGGACATTAATGTGTCCAGATGAATGTAGAGGATT 909 Query 110945 ATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAA 111004 || ||| |||| ||| |||| ||||| | | || ||| |||||||| || |||| | Sbjct 910 ATATGAAGTATGGGGAGAAGAATTTGATAAATTATATGAACAATATGAAGAAAAAGGAAT 969 Query 111005 GTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGA 111064 | || ||| | | ||||| ||| || | ||||| ||| | |||||||| | || Sbjct 970 GGGACGTAAAACAGTACCAGCACAAAAATTATGGTTTGCAATATTACAATCACAAATAGA 1029 Query 111065 AACTGGAACTCCTTATATTTTGTATAAAGAT-CATATTAATCGCAAATCTAATCAAATGA 111123 ||| ||||| || ||||| || ||||||||| ||| |||| ||| |||||||| | Sbjct 1030 AACAGGAACACCATATATGTTATATAAAGATGCAT-GTAATGCAAAAAGTAATCAAAAAA 1088 Query 111124 ATTTAGGAACAATTAAGTCTAGTAATTTGTGCTGTG 111159 ||||||||||||| || || |||||||| || |||| Sbjct 1089 ATTTAGGAACAATAAAATCAAGTAATTTATGTTGTG 1124 >seq4890 Length=280387 Score = 89.7 bits (98), Expect = 1e-12 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 131864 GTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGG 131923 || || |||||| ||| ||||| || ||||| ||||| |||| |||||| || ||| Sbjct 127762 GTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCAGGATCTTTTGCTGCTATATTCTGG 127821 Query 131924 CTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGAT 131983 || ||||| | ||| | |||||||||||| | || |||||| | ||||| |||||| Sbjct 127822 CTAAAGAAAAGAGGACTCATGCCTGGACTCACTTTTTCCAATGAGCTCATCAGCAGAGAT 127881 Query 131984 GAAG 131987 |||| Sbjct 127882 GAAG 127885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179009410524097