Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq11610 107 2e-18 seq8207 104 2e-17 seq311227 87.8 2e-12 seq4890 82.4 7e-11 >seq11610 Length=252271 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| || ||| ||| |||||| |||||||| || | | Sbjct 43588 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCTGCA 43647 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| || |||||||| ||||||||||| || || || || | Sbjct 43648 AAGATCAACCTCTGCTGGTCTGGAGGGATGCCTTCTTTTTCTTGGATCTTCCCCTTGACA 43707 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | |||||||| || | || | |||||||||||||| |||||| Sbjct 43708 TTCTCGATGGTGTCACTAGGCTCCACCTCCAGAGTGATGGTTTTACCAGTCAGGGTTTTT 43767 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 43768 ACAAAGATCTGCAT 43781 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||||| ||||| || | | |||||||| || ||||||||||| || ||| || Sbjct 43107 CAAGCGCAGGACCAAGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCG 43166 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 | |||||| |||||||| || | | |||| | | ||| || ||||| || ||||| || Sbjct 43167 CCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTC 43226 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || || || || | | || | || || | |||||||| || | || Sbjct 43227 CTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGT 43286 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || ||||| |||| || || | ||| |||||||| Sbjct 43287 GATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 43325 >seq8207 Length=439286 Score = 104 bits (114), Expect = 2e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564 |||| ||| ||||| | ||||||||||||||||| ||| |||||| || ||||| ||| Sbjct 380563 TACTCCACTATTTCTGTACACAGGTTGCTGCATTTGATGGTTCCCAAGTTCTGCTGGTTG 380504 Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 147614 || |||||||| || | |||||| ||||||||||||| ||| ||||| Sbjct 380503 CTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTGCCTGTCTC 380454 >seq311227 Length=303 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 131933 TCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAG 131992 |||||||| || ||||||||||||| || | |||||| | ||||||||| | | | Sbjct 176 TCTTTTTGGATATTGTAGTCGCTCAGTGTTCTTCCATCTTCTAACTGTTTACCAGCAAAT 117 Query 131993 ATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGT 132052 |||| ||| || |||||||| || || ||||| ||||| || ||| ||||| | Sbjct 116 ATTAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCTTGGATCTTTGCTTTCACATTC 57 Query 132053 TCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 132108 || | || || | || || ||||| | || | ||||| || |||| |||||| Sbjct 56 TCTATTGTGTCTGATGGTTCTACTTCCAAGGTTATTGTTTTTCCGGTCAAAGTTTT 1 >seq4890 Length=280387 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 47196 AATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAA 47255 ||||| ||||| |||||| | |||||||| | ||||| ||||| ||||| || |||||| Sbjct 141379 AATCCCTTTGATTTTATGGAAAACATTTCCTTAGAGGGGAAAACAAATTTCTTTGAGAAA 141438 Query 47256 CGAGTCGGAGAGTATAAGCGCTT 47278 ||||| | ||||||| |||| || Sbjct 141439 CGAGTTGCAGAGTATCAGCGTTT 141461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473553876177720