Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq4623 111 5e-21 seq503693 107 6e-20 seq25817 107 6e-20 seq9955 107 6e-20 seq4622 107 6e-20 seq580 104 7e-19 seq13371 100 9e-18 seq11610 98.7 3e-17 seq5121 98.7 3e-17 seq5086 98.7 3e-17 seq2587 98.7 3e-17 seq4841 95.1 4e-16 seq2217 95.1 4e-16 seq10208 93.3 1e-15 seq3405 91.5 5e-15 seq14677 87.8 6e-14 seq434171 86.0 2e-13 seq1311 86.0 2e-13 seq14330 84.2 7e-13 seq4634 84.2 7e-13 seq471155 82.4 2e-12 seq14742 80.6 8e-12 seq4483 80.6 8e-12 seq4230 80.6 8e-12 seq70 80.6 8e-12 >seq4623 Length=396993 Score = 111 bits (122), Expect = 5e-21 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 269250 TGGCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 269309 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 269310 TCCCGGGTTTCGGC 269323 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 259973 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 259914 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 259913 CCGGGTTTCGGC 259902 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 283315 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 283256 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 283255 CCGGGTTTCGGC 283244 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 381759 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 381700 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 381699 CCGGGTTTCGGC 381688 Score = 95.1 bits (104), Expect = 4e-16 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||| Sbjct 121933 GGCTGAAATAGCTCAGTTGAGAGAGCATTAGACTGAAGAGCTAAAGGTCCCTGGTTCAAT 121874 Query 2828 CC 2829 || Sbjct 121873 CC 121872 Score = 84.2 bits (92), Expect = 7e-13 Identities = 62/71 (87%), Gaps = 1/71 (1%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATC-TAAAGGTCCCTGGTTCA 2825 |||||||| |||||||| |||||||| |||||||||||||| ||||| |||||||| || Sbjct 277119 TGGCTGAAATAGCTCAGCTGGGAGAGAGTTAGACTGAAGATCTTAAAGATCCCTGGTCCA 277178 Query 2826 ACCCCGGGCTT 2836 ||||| || || Sbjct 277179 ACCCCAGGTTT 277189 >seq503693 Length=1391 Score = 107 bits (118), Expect = 6e-20 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 386 GCCGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 445 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 446 CCGGGTTTCGGC 457 >seq25817 Length=25461 Score = 107 bits (118), Expect = 6e-20 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || |||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 18212 GCCGAAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 18271 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 18272 CCGGGTTTCGGC 18283 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 12971 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 13030 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 13031 CCGGGTTTCGGC 13042 >seq9955 Length=265778 Score = 107 bits (118), Expect = 6e-20 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 227850 GCCGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 227791 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 227790 CCGGGTTTCGGC 227779 >seq4622 Length=626524 Score = 107 bits (118), Expect = 6e-20 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 182578 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 182637 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 182638 TCCCGGGTTTCGGC 182651 >seq580 Length=343627 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 261415 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGACC 261356 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 261355 CCGGGTTTCGGC 261344 >seq13371 Length=159405 Score = 100 bits (110), Expect = 9e-18 Identities = 63/68 (93%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 66113 GCTGAAATAGCTCAGTTGGGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 66172 Query 2829 CCGGGCTT 2836 ||||| || Sbjct 66173 CCGGGTTT 66180 >seq11610 Length=252271 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 55406 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 55347 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 55346 CCGGGTTTCGGC 55335 >seq5121 Length=132008 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||| ||||||||| |||||||||||||||||||||||||||||||| | Sbjct 53339 GCCGAAATAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 53398 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 53399 CCGGGTTTCGGC 53410 >seq5086 Length=619898 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 557216 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 557157 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 557156 CCGGGTTTCGGC 557145 >seq2587 Length=401223 Score = 98.7 bits (108), Expect = 3e-17 Identities = 62/67 (93%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 199786 TGGCTGAAATAGCTCAGTTGGGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 199845 Query 2827 CCCCGGG 2833 || ||| Sbjct 199846 TCCTGGG 199852 >seq4841 Length=255414 Score = 95.1 bits (104), Expect = 4e-16 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||| ||||||| ||||||||||| |||||||| |||||||||||||||| ||||| Sbjct 154895 TGGCTGAAATAGCTCACTTGGGAGAGCACTAGACTGAGGATCTAAAGGTCCCTGATTCAA 154954 Query 2827 CCCCGGGCTT 2836 |||||| || Sbjct 154955 TCCCGGGTTT 154964 >seq2217 Length=155761 Score = 95.1 bits (104), Expect = 4e-16 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 || |||||| |||||||||| ||||||| ||||| |||||||||||||||| |||||||| Sbjct 1391 ATAGCTGAAATAGCTCAGTTCGGAGAGCGTTAGATTGAAGATCTAAAGGTCTCTGGTTCA 1450 Query 2826 ACCCCGGGCTTCAGC 2840 | || ||| |||||| Sbjct 1451 ATCCTGGGTTTCAGC 1465 >seq10208 Length=224026 Score = 93.3 bits (102), Expect = 1e-15 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 100028 TGGCTGAAATAGCTCAGGTGGGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 100087 Query 2827 CCCC 2830 ||| Sbjct 100088 TCCC 100091 >seq3405 Length=76137 Score = 91.5 bits (100), Expect = 5e-15 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 2778 GCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCTTC 2837 |||||||||||||||||| ||||||||||||||||||| |||||||||| | |||| ||| Sbjct 2595 GCTCAGTTGGGAGAGCATCAGACTGAAGATCTAAAGGTTCCTGGTTCAATCGCGGGTTTC 2654 Query 2838 AGC 2840 ||| Sbjct 2655 AGC 2657 >seq14677 Length=275310 Score = 87.8 bits (96), Expect = 6e-14 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 ||||| ||| |||||||||||| |||| |||| |||||||||||||||||||||||||| Sbjct 28129 ATGGCCGAAATAGCTCAGTTGGAAGAGTGTTAGTCTGAAGATCTAAAGGTCCCTGGTTCA 28070 Query 2826 ACCCCGGG 2833 | ||| || Sbjct 28069 ATCCCAGG 28062 >seq434171 Length=457 Score = 86.0 bits (94), Expect = 2e-13 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||||||| ||||| |||||||||||||||||||||| |||| Sbjct 203 GCTGAAATAGCTCAGTTGGGAGATAATTAGGCTGAAGATCTAAAGGTCCCTGGCTCAA-T 261 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 262 CCGGGTTTCTGC 273 >seq1311 Length=1436827 Score = 86.0 bits (94), Expect = 2e-13 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCT 2835 ||||||||| |||||||| ||||||||||||||||||||| |||||||| | |||||| | Sbjct 975901 TAGCTCAGTGGGGAGAGCGTTAGACTGAAGATCTAAAGGTTCCTGGTTCGATCCCGGGTT 975842 Query 2836 TCAGC 2840 |||| Sbjct 975841 CCAGC 975837 Score = 80.6 bits (88), Expect = 8e-12 Identities = 54/59 (92%), Gaps = 1/59 (2%) Strand=Plus/Minus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTG-GTTCAACCCCGGG 2833 |||||| ||||||||||||||||||||||||||||||||| |||| |||| | |||||| Sbjct 976371 TAGCTCGGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTTCCTGTGTTCTATCCCGGG 976313 >seq14330 Length=189818 Score = 84.2 bits (92), Expect = 7e-13 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||| ||||||| |||||| ||||| ||||||||||||||||||| | | Sbjct 166575 GCCGAAATAGCTCAGCTGGGAGAACATTAGGCTGAAAATCTAAAGGTCCCTGGTTCGATC 166634 Query 2829 CCGGGCTTC 2837 ||||| ||| Sbjct 166635 CCGGGTTTC 166643 >seq4634 Length=538625 Score = 84.2 bits (92), Expect = 7e-13 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || |||||||| ||||||| | |||||||||||| ||||||||||||||||||| ||||| Sbjct 298088 AAATAGCTCAGCTGGGAGACCGTTAGACTGAAGACCTAAAGGTCCCTGGTTCAATCCCGG 298147 Query 2833 GCTT 2836 | || Sbjct 298148 GTTT 298151 >seq471155 Length=635 Score = 82.4 bits (90), Expect = 2e-12 Identities = 53/57 (93%), Gaps = 1/57 (2%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 |||||| |||||| ||||||||||||||| |||||||||||||||||||||||||| Sbjct 319 GCTGAAACAGCTCACTTGGGAGAGCATTAG-CTGAAGATCTAAAGGTCCCTGGTTCA 264 >seq14742 Length=165296 Score = 80.6 bits (88), Expect = 8e-12 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || ||||||||||||||||| |||||||||||||||||| |||| |||||||| ||| | Sbjct 93483 AAATAGCTCAGTTGGGAGAGTGTTAGACTGAAGATCTAAAAGTCCTTGGTTCAATCCCAG 93424 Query 2833 GCTTCAG 2839 ||||| Sbjct 93423 ATTTCAG 93417 >seq4483 Length=1173097 Score = 80.6 bits (88), Expect = 8e-12 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||| | |||| |||||||| |||||||||||||||| ||||||||||||||| Sbjct 502197 TGGCTGAAATGACTCAACTGGGAGAGTGTTAGACTGAAGATCTAGAGGTCCCTGGTTCAA 502256 Query 2827 CCCCGGGCTTCAGC 2840 ||| || ||| || Sbjct 502257 TCCCAGGTTTCCGC 502270 >seq4230 Length=176587 Score = 80.6 bits (88), Expect = 8e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || ||||||||||||||||| |||||||||||||||||||| |||||||| | ||||| Sbjct 154956 AAATAGCTCAGTTGGGAGAGTGTTAGACTGAAGATCTAAAGGACCCTGGTTTGATCCCGG 155015 Query 2833 GCTT 2836 | || Sbjct 155016 GTTT 155019 >seq70 Length=540140 Score = 80.6 bits (88), Expect = 8e-12 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 |||| || |||||||||||||||| |||||| ||||||||||||||||||||| |||| Sbjct 84046 TGGCCAAAATAGCTCAGTTGGGAGAACATTAGGCTGAAGATCTAAAGGTCCCTGATTCA 83988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15760638201165