Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq9486 279 6e-70 seq3299 156 5e-33 seq15661 154 2e-32 seq17125 140 4e-28 seq13713 105 8e-18 >seq9486 Length=320400 Score = 279 bits (308), Expect = 6e-70 Identities = 253/319 (79%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 |||||||||||||||| || | |||||||||||| || || || | | ||| || ||| Sbjct 9545 GTGGTGACCCAGGATGTAAGAGGGCTGCTGAACACACCTGCTTCTTTAAGATGTTCTCTG 9486 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || | | | ||||| || ||||||| || ||||| ||||||||| | | ||||| Sbjct 9485 CAAAATCCCCAGGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCAGAA 9426 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||||| || | ||| | |||| ||||| || |||||||| || || ||||||||| Sbjct 9425 AACATGATCACCTACAGCGAGAACCATGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAG 9366 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||| ||||||||||| |||||| ||||||||||| || || |||||||||||||| Sbjct 9365 ATAAATATCACCCAGCTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTG 9306 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||| |||| ||| ||||| ||||||||||| |||||||| ||||| || ||||| || Sbjct 9305 GAGGATGAGGCGTGTTACAAGTGCCTCTTTAATACCTTTGGTTCTGGAAAGATCTCAGGA 9246 Query 171372 GTGGCCTGCCTCACCCTCT 171390 | ||||||||||| |||| Sbjct 9245 ATAGCCTGCCTCACTCTCT 9227 Score = 197 bits (218), Expect = 2e-45 Identities = 210/277 (76%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || |||||||| || || || || |||||||| | ||| || ||||| || ||||| || Sbjct 6895 GTACAGCCCACAGTATTCCTTCACTATAAATTATCTGAAGATCACCTAAATATCACTTGC 6836 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||||||||| ||||| | ||| ||| | ||||| | || | ||||| ||||| Sbjct 6835 TCTGCCAATGCTCGCCCAGCCCCTATGATCTCCTGGAAAGTCTCTGAGTCAGGGATTGAG 6776 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 ||||||| |||| | | || ||| | |||||||| || ||||| ||||| | ||||| Sbjct 6775 AACAGTACCGAGATCGTCTCACATCCCAATGGAACAACATCTGTCACCAGCATCCTCCAG 6716 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 | |||||||||||||| ||| |||| ||||| || |||||||| || |||||||| Sbjct 6715 ATCAAAGACCCCAAGAGACAGGTGGGGAAGGATGTGATCTGCCAGGTACTACACCTGGGG 6656 Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 | ||| ||| ||| ||||||||||| | ||| |||| Sbjct 6655 ACTGTGACTGACTACAGGGAAACTGTGAACAAAGGTA 6619 >seq3299 Length=266545 Score = 156 bits (172), Expect = 5e-33 Identities = 145/184 (79%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||| | || | ||| || | ||||||||||||||| | ||||||||| |||||||| Sbjct 77727 CTTCAGGTCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAA 77668 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || |||||||||||||| ||||||| ||||||| |||||| || ||||| || | Sbjct 77667 GGGCACACCCAGGCCCATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCACCATT 77608 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGC 147161 ||||||| |||||||| ||| |||||| || || || |||||| || || || | Sbjct 77607 CACCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATGAGAGGGAGATCTGA 77548 Query 147162 GGGG 147165 |||| Sbjct 77547 GGGG 77544 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||| ||||||||||||||||| || ||||| || | || || ||||| Sbjct 75175 GCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCTAAATCCCCTTCAGCTCTGTTG 75116 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 ||||||||| | | | || || ||||||||| ||| ||||| || ||||||| Sbjct 75115 GAGAAGCCCAGGCCATCCAAGAAGTCTCGGGACCCGTTGGCATCCCAAATTTTCACTCCC 75056 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCC 147435 |||| || || ||||||| || ||||| ||| Sbjct 75055 TTGGAAGACAGTTCCTTAGCGTTGGTGGATCCC 75023 >seq15661 Length=253168 Score = 154 bits (170), Expect = 2e-32 Identities = 133/167 (80%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| || ||||| ||||||||| |||||||||||| Sbjct 102099 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAAATGATCCAGTTTTACCTGGAGGAGGTGA 102040 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| ||| ||||| ||||| |||||||| || || | Sbjct 102039 TGCCACAGGCTGAGAACCAC------------GGCCCTGACATCAAGGAGCACGTGAATT 101992 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||| ||||| |||||||| || || |||||||||| ||| Sbjct 101991 CCCTGGGGGAGAAGCTGAAGACCCTCAGGCTGCGGCTGCGGCGCTGT 101945 Score = 102 bits (112), Expect = 9e-17 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| |||||||| |||||||| |||||||||||||| || || || ||||||| Sbjct 99778 AGCTCCAAGAGAAGGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 99719 Query 178522 TAGAAGCTTACATGACAACAAAAATG 178547 ||||| | ||||||||||| || ||| Sbjct 99718 TAGAAACCTACATGACAACGAAGATG 99693 >seq17125 Length=73516 Score = 140 bits (154), Expect = 4e-28 Identities = 277/409 (68%), Gaps = 6/409 (1%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| || |||||||| || |||| || | ||||||| ||||| | | |||||| Sbjct 24764 GTATTCCCTGGTGTTCATGATTGGTCTGCTGGGCAATGTAGTGGTGGTGGTGATCCTCAC 24705 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| |||||||||||| | || ||||||||||||| |||| ||||| ||||| || ||| Sbjct 24704 AAAATACAAGAGGCTCCGTATTATGACCAACATCTACCTGCTCAACTTGGCCATTTCTGA 24645 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 |||| | | ||||| || || || |||||||||| | || ||||| | Sbjct 24644 TGTGCTCTTCCTATTCACGCTGCCATTCTGGATTCACT--ATGTTAGGTGGAAC----GA 24591 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 ||||| | |||||||||||||||||| | || || | || ||| |||| Sbjct 24590 GTGGGTTTTTGGCCACCACATGTGTAAGTTGCTCTCCGGGCTCTATTACATGGGTTTGTA 24531 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909 ||| || || | || |||||||| ||||| | ||| ||||||| || | || |||| Sbjct 24530 CAGTGAGATCTTCTTCATCATCCTCTTGACCATAGACCGGTATCTGGCCATCGTCCACGC 24471 Query 8910 GGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCTG 8969 ||| | | | | ||| || | | || ||| || ||||| || | |||| Sbjct 24470 TGTGTTTGCCCTTCGAGCCCGGACAGTTACTTTTGGTATCGTCACCAGCATCTTCACCTG 24411 Query 8970 GATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCC 9018 | ||||| ||| | | | || | || || ||| ||||| |||| ||| Sbjct 24410 GGGCCTGGCAGTGCTAGCAGCCCTCCCTGAATTTTTCTTTCATGAGTCC 24362 >seq13713 Length=227621 Score = 105 bits (116), Expect = 8e-18 Identities = 210/306 (69%), Gaps = 10/306 (3%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| ||||||| | |||| || || ||||| ||| ||| |||| |||||||| Sbjct 186849 GTACTCGGTGGTGTTCGTCATTGGCCTGATCGGCAACATCCTAGTGGTCCTGGTCCTCAT 186790 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | ||||||||||||| | |||||||| ||||| ||| ||||||||||| || ||| Sbjct 186789 GCAATACAAGAGGCTCAAAAGCATGACCAGCATCTACCTCCTCAACCTGGCCATTTCTGA 186730 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 ||| | | | ||||| || ||||| ||||| ||| | | || ||| | || Sbjct 186729 CCTCGTCTTCCTCTTCACGCTGCCCTTCTGGATCGACTACAA-----GGTGAA-GGATGA 186676 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTT--TATAGTGGGCCTTTGCAACGTGGCACTG 8847 |||| || || |||||||||| | | | || || | ||| ||| || Sbjct 186675 CTGGGTTTTCGGTGACGCCATGTGTAAGCTGCTCTCTGGGTTCTATTTCACG-GGC-TTG 186618 Query 8848 TACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTAC 8907 | |||||| || | || ||||||||| |||| | |||||||| | || |||| || Sbjct 186617 TTCAGCGAGATCTTCTTCATCATCCTGCTGACCATCGACAGGTACATGGCCATTGTCCAC 186558 Query 8908 GCGGTG 8913 || ||| Sbjct 186557 GCTGTG 186552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579745092232800