Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq512960 107 2e-18 seq13283 107 2e-18 seq17057 105 6e-18 seq2312 98.7 9e-16 seq2274 95.1 1e-14 seq59220 89.7 5e-13 seq2656 89.7 5e-13 seq101 86.0 6e-12 seq311227 82.4 7e-11 >seq512960 Length=5958 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| || || |||||||||||||||||| || | | Sbjct 4554 CCACCACGAAGTCTCAACACAAGATGAAAAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 4495 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || | ||| ||||| || ||||| |||| | |||||||| |||| Sbjct 4494 AAAGTACGTCCATCTTGCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAAGAGGA 4435 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| | | |||||| ||| | | || | | || || | | ||| Sbjct 4434 ATTCCTTCCTTATTCTGGATCTTGGCCTTTACATTTTCTATGGTATCTGAGGGCTTGACC 4375 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || ||||||| ||| |||||||| |||||||| Sbjct 4374 TCGAGAGTGATGGTCTTCCCCGTCAGAGTCTTCACAAAAATCTGCAT 4328 >seq13283 Length=25003 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| || || |||||||||||||||||| || | | Sbjct 7249 CCACCACGAAGTCTCAACACAAGATGAAAAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 7190 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || | ||| ||||| || ||||| |||| | |||||||| |||| Sbjct 7189 AAAGTACGTCCATCTTGCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAAGAGGA 7130 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| | | |||||| ||| | | || | | || || | | ||| Sbjct 7129 ATTCCTTCCTTATTCTGGATCTTGGCCTTTACATTTTCTATGGTATCTGAGGGCTTGACC 7070 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || ||||||| ||| |||||||| |||||||| Sbjct 7069 TCGAGAGTGATGGTCTTCCCCGTCAGAGTCTTCACAAAAATCTGCAT 7023 >seq17057 Length=148899 Score = 105 bits (116), Expect = 6e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | | || || | || ||||||||||| || ||||| Sbjct 117186 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 117127 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | |||||||||||| | |||| || ||||| ||| |||||| ||||| | Sbjct 117126 GATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTT 117067 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||||| ||||| || || || |||| || ||||| Sbjct 117066 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 117007 Query 35725 AAATATCTGCATTCTG 35740 || || |||||| || Sbjct 117006 GAAGATTTGCATTTTG 116991 >seq2312 Length=925560 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | || |||||||||||||||||| || | | Sbjct 16644 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 16585 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||| ||||| || || || |||| | ||||||| |||||| Sbjct 16584 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCTAAGATCAGTCTTTGCTGGTAAGAAGGA 16525 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| ||| || ||| | | || | || || | |||||| Sbjct 16524 ATTCCTTCCTTATCCTGGATTTTGGCCTTTACATTTTCTGTTGTATCCGAGGGCTCCACC 16465 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || || |||| || ||||| || |||||||| Sbjct 16464 TCGAGAGTGATGGTCTTCCCTGTCAGGGTCTTCACGAAAATCTGCAT 16418 >seq2274 Length=301413 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | || |||||||||||||||||| || | | Sbjct 270433 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 270492 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || | | || ||||| ||||| || | ||| |||| | |||||||| | |||| Sbjct 270493 AAAGTATGTCCATCTTCCAGTTGCTTGCCAGGAAAGATCAGTCTTTGCTGGTCAGGAGGA 270552 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | || || ||| |||||| ||| | | || | | || || | | ||| Sbjct 270553 ATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCTAGGGCTTGACC 270612 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| ||||| ||||| || |||||||| |||||||| Sbjct 270613 TCGAGAGTGATGGTTTTCTTCGTCAGGGTCTTCACAAAAATCTGCAT 270659 >seq59220 Length=24887 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | || ||| |||||||||||||| || | | Sbjct 15074 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCATTTTGAATGTTGTAGTCAGAC 15015 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||| ||||| || ||||| |||| | |||| ||| | |||| Sbjct 15014 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTAGTCAGGAGGA 14955 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | || || ||| |||||| ||| | | || | | || || | || | | Sbjct 14954 ATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGAAC 14895 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| | || || |||| || |||||||| |||||||| Sbjct 14894 TCGAGAGTGATGATCTTCCCTGTCACGGTCTTCACAAAAATCTGCAT 14848 >seq2656 Length=305558 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||| | | |||||||| | ||| | || |||||||||||| ||||| || | | Sbjct 78851 CCACCATGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATATTGTAGTCAGAC 78792 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || | | || || || ||||| || ||||| |||| | |||||||| | |||| Sbjct 78791 AAAGTACATCCATCTTCTAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 78732 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| | |||| ||| | | || | | || || | || ||| Sbjct 78731 ATTCCTTCCTTATCCTGGGTCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACC 78672 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || ||| ||| || |||||||| |||||||| Sbjct 78671 TCAAGAGTGATGGTCTTCCCCATCAGGGTCTTCACAAAAATCTGCAT 78625 >seq101 Length=221765 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||| | | |||||||| | ||| | || |||||||||||||||||| || | | Sbjct 70579 CCACCATGAAGTCTCAACACTAGATGAAGAGTGGGCTCCTTTTGAATGTTGTAGTCAGAC 70638 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || | | || ||||| ||||| || ||||| |||| | |||||||| | |||| Sbjct 70639 AAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 70698 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||| | | || | || || | || ||| Sbjct 70699 ATCCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTTTTGTATCCAAGGGCTCAACC 70758 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | | |||| || || ||| ||| || ||||| || |||||||| Sbjct 70759 TTGAGAATGATGGTCTTCCCCATCAGGGTCTTCACGAAAATCTGCAT 70805 >seq311227 Length=303 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 35522 CTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCG 35581 || || || ||||| | ||||| || ||||| || ||||| ||| || |||| | Sbjct 200 CTTAATACTAAATGGAGTGTACTTTCTTTTTGGATATTGTAGTCGCTCAGTGTTCTTCCA 141 Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || || | ||| ||||| |||||||| || || ||||| || | |||| | ||||| Sbjct 140 TCTTCTAACTGTTTACCAGCAAATATTAAACGTTGCTGATCTGGTGGAATTCCTTCCTTA 81 Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 || ||||||| |||| | | | | ||||| | ||| || |||| || || Sbjct 80 TCTTGGATCTTTGCTTTCACATTCTCTATTGTGTCTGATGGTTCTACTTCCAAGGTTATT 21 Query 35702 GTTTTACCCGTCAAAGTTTT 35721 ||||| || ||||||||||| Sbjct 20 GTTTTTCCGGTCAAAGTTTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447901888659160