Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq52311 336 3e-87 seq8207 127 3e-24 seq197 125 1e-23 seq4890 107 3e-18 seq297100 86.0 9e-12 >seq52311 Length=1231 Score = 336 bits (372), Expect = 3e-87 Identities = 673/985 (68%), Gaps = 22/985 (2%) Strand=Plus/Minus Query 69270 TGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTC 69329 |||||| ||||||| |||||| ||||||| |||| ||||| | |||||| ||| || Sbjct 1183 TGCTACTGATGCTAAATTACATACTGCTATTTCATCTTTATTTGTAAATTGTACTATTTC 1124 Query 69330 TGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACA 69389 ||||| |||||| |||| || || || | ||||| |||||||| ||| ||||| Sbjct 1123 ACAACATAAATTACTTGATTTTATTGTTCCTAAATTTTTTTGATTACTTTTTGCATTACA 1064 Query 69390 GGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTT 69449 || || || || | ||| | || || || ||||| || || |||| ||||| || Sbjct 1063 TGCATCTTTATATAACATATATGGTGTTCCTGTTTCTATTTGTGATTG--TAATA---TT 1009 Query 69450 CCAAACGACCCTAGCATTTAT-----TACGGTCTT--GTAACGCTTCTCTTT-TTCATAT 69501 ||||| | || ||| | ||| || || || | | || ||| ||||||| Sbjct 1008 GCAAACCA---TAATTTTTGTGCTGGTACTGTTTTACGTCCCATTCCTTTTTCTTCATAT 952 Query 69502 TGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTT 69561 ||| ||||| || ||||| |||||||| || |||| ||||| |||||||| | Sbjct 951 TGTTCATATAATTTATCAAATTCTTCTCCCCATACTTCATATAATCCTCTACATTCATCT 892 Query 69562 GGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATC 69621 |||||||| |||| ||| | || | | |||| ||||||||||| ||| || ||| Sbjct 891 GGACACATTAATGTCCATTGTTTATTTGCTTCTACTCTTTTCATAAATAAATCTGGTATC 832 Query 69622 CAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGA 69681 || | || ||| | |||||| | ||| ||||||| || ||||||| | | | Sbjct 831 CATAATGCATAAAATAAATCTCTTGCTCTTAAATCTTCATGACCATGATTTTTTCTTAAA 772 Query 69682 TCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCA-TGACTCCCGG 69740 || | || | | ||||| | |||||||||||||| |||||| || | ||| ||| Sbjct 771 TCTAAAAGTTTAAATATATCTGCATGCCATGGTTCTAAATATATTGCAAATGAA-CCCTT 713 Query 69741 TCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGG 69800 || ||| ||||| || |||| || | ||||| |||| | | | | | ||| || Sbjct 712 TCTTTTTCCACCTCCTTGGTCTACATACTTTGCAGTTGAATTAAATATTTTTAACATTGG 653 Query 69801 AATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATT 69860 | || ||||||||| | ||||| ||||| |||||| ||| ||||| | ||| || Sbjct 652 TACTATTCCATTAGATATTCCATTAGTTCCTCTAATATATGATCCACTTGCTCTAATTTT 593 Query 69861 ACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGT 69920 | |||||||| || ||||||||||| ||| || | ||||| |||| ||||| Sbjct 592 ATGAATAGATAATCCAATTCCTCCTGCACACTTACTTATAAATGCACATTGTTTTAATGT 533 Query 69921 GTCATATATACCCTCTATGCTATCATCTATCATGT-TAAGAAGAAAACAGCTAGACATTT 69979 || |||| || |||| ||||||| ||| | ||| || |||||| ||||||| Sbjct 532 TGCAAATATTCCTTCTAATGAATCATCTTGCATATCTAATAA-AAAACATGATGACATTT 474 Query 69980 GATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAG 70039 | ||| | | || || | |||||||||||| || | ||| || || || || ||| | Sbjct 473 GTGGATTTTTTGTACCAGAATTAAATAATGTTGGTGTTGCATGTGTAAAATATCTTTGAC 414 Query 70040 AAAGCAGATTGTATGTTTCAATAGCTGATTCTATA-TCCCACTGATGAATTCCTATCGCG 70098 | | ||| ||||||| || | | ||||| | | |||| ||| ||||| | Sbjct 413 TCATTAAATTATATGTTTGTATTGTTTTTTCTAAATTTCCAC-AATGTATTCCACATGAT 355 Query 70099 ACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTAT 70158 || | ||| |||||||| || |||| |||| | |||| ||||| | | || | ||| Sbjct 354 ACTCTCATTAACATATGTTGTGGTCTTTCTGCTATTTTTCCATTTACTCTTAATAAATAT 295 Query 70159 GATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATA 70218 ||| |||| | |||||||| |||||||| | ||| ||| ||||||| ||| || Sbjct 294 GATCTTTCTAATGTTTTAAATCCAAAATAATCATATTGAAAATCTCTTTTATAATCTATT 235 Query 70219 ACAGAATTTAGTTTATCCTTATATT 70243 | ||||| ||| || |||| || Sbjct 234 GCTTGATTTAATTTTTCTTTATTTT 210 >seq8207 Length=439286 Score = 127 bits (140), Expect = 3e-24 Identities = 108/133 (81%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || ||||| |||||||| || ||||||||||| ||||| | || Sbjct 388241 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATTGAC 388182 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||||||||| || ||||||||||| ||||| ||||| || || | | |||||| Sbjct 388181 TCATTATTTCCCAGTATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 388122 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 388121 TTTCTTATACCAT 388109 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390 || |||| |||| ||| || ||||| ||||| || || || | ||| ||||| ||||| | Sbjct 363043 CACCACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATTCTTGCTGCCA 362984 Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450 | || ||||||||||| || | ||||| | || || ||| | || ||||| || |||| Sbjct 362983 GGATGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTAT 362924 Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 | | ||| | ||| || || || | |||| ||||| || |||||||||| Sbjct 362923 CCAGTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGG 362873 >seq197 Length=217379 Score = 125 bits (138), Expect = 1e-23 Identities = 102/124 (82%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||| ||||| ||||| | ||| || ||||| ||||| |||||||| || || || || | Sbjct 121521 CCTCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCT 121462 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| |||||||||||||||||||| ||||| ||||| | Sbjct 121461 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGG 121402 Query 39759 CAAC 39762 | || Sbjct 121401 CTAC 121398 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||||||| || ||||| || | |||||||||||||| ||||| |||||||| || || Sbjct 119557 ATCTTTAATGTAAGTATCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 119498 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982 || || || || || ||||| | ||||| ||||| || || ||| Sbjct 119497 AATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCT 119452 >seq4890 Length=280387 Score = 107 bits (118), Expect = 3e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | || || ||||| |||||||||||||| || || | || || Sbjct 127883 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCTTT 127824 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| |||||||||||||| || ||||| || |||||||| || ||||| || Sbjct 127823 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 127764 Query 39761 AC 39762 || Sbjct 127763 AC 127762 >seq297100 Length=295 Score = 86.0 bits (94), Expect = 9e-12 Identities = 163/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAG-CATT 39852 ||||| |||| |||||||| |||||| | ||| || | ||||||||||| | ||| Sbjct 13 ATCCATTTCTTTGCCCAATTAGCTTTATCCTTCACTGCATCTATTGTTTCTATTGCCATA 72 Query 39853 AAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACAT 39912 || | | || ||| |||| |||||| | ||| | ||||| || | |||||| | Sbjct 73 AACAATCTCAT-TTTCTCATTTTCATCTTTTATATAATTCTCTATCAATAAACTATATGT 131 Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCT-TGCTTCAGTAA 39971 || ||||| |||||||| | || || |||||| ||| |||| ||| ||||||| || Sbjct 132 CTCAGAATGAATGTTTTCCACTGCGATTTGAAATGAGTAGAAAC-TCTGAGCTTCAGGAA 190 Query 39972 TTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACT 40026 | || ||| | |||| | || |||||||| || ||||| ||||| Sbjct 191 CCTTCACATCTCTAAGAAATTTGAGTGCTAAATTTTCCAAAACAATTCCGTCACT 245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 682502477534280