Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq197 116 3e-21 seq4890 89.7 4e-13 seq111 86.0 5e-12 >seq197 Length=217379 Score = 116 bits (128), Expect = 3e-21 Identities = 98/118 (83%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| |||||| ||||| || ||||| ||||| || |||||||| Sbjct 119441 CGGTTTAGCCAAGAAGTTCAGATTACC-GAAGCCCGTTGTTTCTATGGCTTCCAAATTGC 119499 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || ||||| |||||||| ||||| || || ||||| ||||| |||||| Sbjct 119500 CATGGAAAACATACATTCTGAAATGTATAGTCTCCTCATTGATACTTACATTAAAGAT 119557 Score = 102 bits (112), Expect = 6e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| | || || ||||| | ||||||||||| |||||||| || || ||||| Sbjct 121386 GGAGAACGTGTGGTAGCCTTTGCCGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCA 121445 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGA 44238 | ||||| ||| | ||||||||||| |||||||||| | |||||||| ||||| Sbjct 121446 TCGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGA 121501 >seq4890 Length=280387 Score = 89.7 bits (98), Expect = 4e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || || || |||||||| || ||||| | Sbjct 141377 AAAATCCCTTTGATTTTATGGAAAACATTTCCTTAGAGGGGAAAACAAATTTCTTTGAGA 141436 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| |||| ||| |||||||| Sbjct 141437 AACGAGTTGCAGAGTATCAGCG 141458 Score = 87.8 bits (96), Expect = 1e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | |||||||| || || | |||||| ||| ||||||| ||| |||||||||| Sbjct 118519 TTTGTCATCTTTCCAATCCAGTACCCTGACATCTGGAAAATGTATAAACAAGCACAGGCA 118578 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 || || |||||||||||||| || Sbjct 118579 TCCTTCTGGACAGCAGAAGAGGT 118601 >seq111 Length=253906 Score = 86.0 bits (94), Expect = 5e-12 Identities = 116/162 (72%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599 || ||| ||||||||| || || | |||||| | || || || || ||||| ||||| Sbjct 122561 AACAGTGGTTTGCACATCATCATCTTTGATGAAATTGATGCCATTTGCAAGCAGAGAGGG 122502 Query 19600 T------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653 ||||| | || || ||||||||||||||||| || || ||||| ||| | Sbjct 122501 AGCATGGCTGGTAGCACAGGGGTTCATGACACTGTTGTCAACCAGCTGCTGTCCAAAATT 122442 Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695 || || || | |||||||| || || ||||| ||||| ||| Sbjct 122441 GATGGCGTAGAGCAACTGAACAACATCTTAGTCATTGGTATG 122400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394970173177885