Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq311227 102 7e-17 seq17057 89.7 4e-13 >seq311227 Length=303 Score = 102 bits (112), Expect = 7e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 27036 AATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCA-TGTTGCGCTCGTC 27094 ||||| ||||| | ||| |||||||| |||||||||||||||| |||| | | || Sbjct 197 AATACTAAATGGAGTGTACTTTCTTTTTGGATATTGTAGTCGCTCAGTGTT-CTTCCATC 139 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| | ||||||||| || | || | ||| || ||||| || || | || || ||||| Sbjct 138 TTCTAACTGTTTACCAGCAAATATTAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATC 79 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 |||||| ||||| | |||| ||||||| | ||| ||||| | ||||| | Sbjct 78 TTGGATCTTTGCTTTCACATTCTCTATTGTGTCTGATGGTTCTACTTCCAAGGTTATTGT 19 Query 27215 TTTGCCCGTCAGAGTTTT 27232 ||| || |||| |||||| Sbjct 18 TTTTCCGGTCAAAGTTTT 1 >seq17057 Length=148899 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| ||||| || || ||||| || | |||| | ||||| ||||| || ||| Sbjct 117191 GTAGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 117132 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| ||||| || || || || | || || ||||| ||||||| ||| Sbjct 117131 GCAAAGATGAGCCGCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 117072 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| ||| || || || || || || | ||||| ||||| || Sbjct 117071 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 117012 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||||||||| Sbjct 117011 TTCACGAAGATTTGCAT 116995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422276713792824