Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq52311 93.3 5e-14 seq8207 89.7 6e-13 >seq52311 Length=1231 Score = 93.3 bits (102), Expect = 5e-14 Identities = 151/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 104906 TCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGT 104965 || |||| || || || |||||||| ||| | || ||||| || ||||| ||| ||| Sbjct 1019 TCACAAATAGAAACAGGAACACCATATATGTTATATAAAGATGCATGTAATGCAAAAAGT 1078 Query 104966 AATCAAAAGAATTTGGGTGTGATCAA---GAGTTCCAATCTCTGTACAGAAATCTTGGAA 105022 |||||||| ||||| || || || ||| ||| | ||| ||||| | || Sbjct 1079 AATCAAAAAAATTTAGGAACAATAAAATCAAGT---AATTTATGTTGTGAAATAGTACAA 1135 Query 105023 TTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTAT 105082 |||||| | |||||||| | || || ||||| | |||||| | || | || || | | Sbjct 1136 TTTACAAATAAAGATGAAATAGCAGTATGTAATTTAGCATCAGTAGCATTACCAAAATTT 1195 Query 105083 GTGGATCCAGAGACAAAGACATTTGATTATGAAAAA 105118 || || ||| ||||| |||||||||| | ||||| Sbjct 1196 GTAAATGTAGAAACAAAAACATTTGATTTTAAAAAA 1231 >seq8207 Length=439286 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 104904 AGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGA 104963 ||||||| || ||||| || || || |||||||| |||||||| ||||||| | |||| Sbjct 380443 AGTCTCAGACAGAGACAGGCACCCCGTACATGCTCTACAAAGATTCCTGTAATCGGAAGA 380502 Query 104964 GTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAAT 105023 | || || |||| ||||| ||||| | ||| || ||||||||||| |||| | Sbjct 380503 GCAACCAGCAGAACTTGGGAACCATCAAATGCAGCAACCTGTGTACAGAAATAGTGGAGT 380562 Query 105024 TTACAGACAAAGATGAG 105040 ||| |||||||||| Sbjct 380563 ATACCAGCAAAGATGAG 380579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579519349655480