Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq7025 114 2e-20 seq1986 95.1 2e-14 >seq7025 Length=582757 Score = 114 bits (126), Expect = 2e-20 Identities = 556/878 (63%), Gaps = 31/878 (4%) Strand=Plus/Minus Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTC 13742 ||||||| |||||||| || || || || || ||| | || ||||| || || ||| | Sbjct 250169 GAAGAGGCGGAGTTTCCAATAGCATATTCTATAGTGGTTCATCACAAAATTGAAATGCTT 250110 Query 13743 GAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCC 13802 || | ||||||||||||||||| || ||||| |||| || | ||||||||| | Sbjct 250109 GACAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTATTGTATTCACGTGGACACA 250050 Query 13803 AAGTCCGGCGACGAGTTCAT--CCGGGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAACG 13860 || || | | || | | | || | | ||| ||| | |||||| ||| | Sbjct 250049 AAATCAGAGAAATCCTTTTTGGCTGCAGC-TATTGGC-ATCACATCCTGCTTCAGTAATG 249992 Query 13861 TGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCG 13920 | ||||| | |||| | ||||||||| | |||||||| || || ||||| | Sbjct 249991 TCTTTGTGGCCAGTCAGCTGGAGAGCGTGGTGTATGCGTCCTGGAGCCGGGTTCAGGCTG 249932 Query 13921 ACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACC 13980 |||| | ||||||| |||||| || | | |||| ||||||| | || | Sbjct 249931 ACCTTAACTGCATGCAGGACCTCTACCGGATGAATGCAGACTGGAAGTACCTGATAAATC 249872 Query 13981 TGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGGCCC 14040 | ||||| ||||| || || | || ||||||||||| || || || ||| ||| Sbjct 249871 TCTGCGGTATGGATTTTCCTATTAAAACCAACCTGGAAATTGTCAGGAAGCTCAAGTTGT 249812 Query 14041 TGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAACCACAA---------GCTGC 14091 || || |||| ||| || | ||| | ||||| ||| || | || Sbjct 249811 TGATGGGTGAGAATAACCTAGAAACGGAGAGAATGCCATCCCATAAAAAAGAAAGGTGGC 249752 Query 14092 ACC-GCATCAGGAAGAGGCACGTGG-TGGCCAGCGGCGGCGTGGTGGTCAACACCGGCAG 14149 | |||| | |||| | || ||| ||| || ||||| || | Sbjct 249751 AAAAGCATTATGAAGTTG----TGAATGGAAAGC----------TGACAAACACGGGGAC 249706 Query 14150 GAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTGCGGT 14209 |||| | || || || | || | ||| | || | || || |||| ||| Sbjct 249705 TGACAAAATACATCCACCTCTTGAAACACCTCTGTTTTCAGGCAGTGCCTATTTTGTGGT 249646 Query 14210 CACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCATGCACTG 14269 || |||||| ||||| | ||| ||| || || | | | | ||| | || Sbjct 249645 CAGTAGGGAGTATGTGGAGTACGTGCTCCAGAACCAAAATATCCAAAAGTTTATGGAGTG 249586 Query 14270 GTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGG 14329 | | ||||| |||||||| |||||| | || |||||||| | ||||| || || Sbjct 249585 GGCAAAAGACACATACAGCCCAGACGAGTATCTCTGGGCCACTATTCAGAGGATCCCCGA 249526 Query 14330 GACGCCCGGGGGGATCCCCGTTCA-CGTCAAGTACGACACCTCGGACATGTGGGCCAAGG 14388 | ||| ||| | | || | | ||||||||||| || |||||| || | | Sbjct 249525 -AGTCCCAGGGTCACTGTCCTTGAGCCATAAGTACGACACGTCTGACATGCAAGCGATTG 249467 Query 14389 TCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGC 14448 |||||| || || ||||| |||| ||| || || | || || |||| ||||||| Sbjct 249466 CCAGGTTTGTTAAATGGCAGTACTTCGAAGGAGACGTTTCCAAGGGCGCCCCCTACCCGC 249407 Query 14449 CTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGGC 14508 | ||| |||| ||||||| | | || | ||| | || || | || ||| |||| |||| Sbjct 249406 CGTGCAGCGGCGTCCACGTGCGCTCCGTGTGCGTTTTTGGAGCTGGGGACTTGAACTGGC 249347 Query 14509 TGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 || | |||| | ||| |||| |||||||| |||||| Sbjct 249346 TGTTGCGCGTGCACCACTTGTTTGCCAACAAATTCGAC 249309 >seq1986 Length=81162 Score = 95.1 bits (104), Expect = 2e-14 Identities = 188/275 (68%), Gaps = 10/275 (4%) Strand=Plus/Minus Query 14277 GACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACG--GGACGC 14334 ||||| || |||||||| || ||||| ||||||||| | ||| | || || ||| || Sbjct 30241 GACACCTATAGCCCCGATGAACACCTCTGGGCCACCCTTCAGCG--TGCACCATGGATGC 30184 Query 14335 CCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGGGCCAAGGTCAGGT 14394 | || | ||| ||| |||||| || ||| |||||| |||| | |||| Sbjct 30183 CTGGCTCTGTTCCCTACCACTCCAAGTATCACGTCTCAGACATGACTGCCATAGCCAGGC 30124 Query 14395 TCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTGCG 14454 | ||||||||||| | ||||||| ||| ||| | ||||| | ||| | |||||| Sbjct 30123 TGGTCAAGTGGCAGGGCCACGAGGGAGATGTCAGCATGGGGGCACCTTACGCACCTTGCT 30064 Query 14455 ACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGG---CTGA 14511 || ||||| | ||||||||||| | |||| |||| ||| || | ||| || Sbjct 30063 CTGGAATCCATCAGCGGGCCATCTGCATTTACGGGGCCGGGGACTTGCACTGGATTCTCC 30004 Query 14512 AGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 ||| || ||||| || || |||||||| ||| Sbjct 30003 AGA---ACCATCACCTCTTGGCAAACAAGTTTGAC 29972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 654513577419520