Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Giraffa_20camelopardalis_20tippelskirchi_20[genbank_20GCA_5F00165123 5.1_202016-05-20] 513,177 sequences; 2,705,072,464 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq3299 132 4e-26 seq3637 91.5 1e-13 >seq3299 Length=266545 Score = 132 bits (146), Expect = 4e-26 Identities = 124/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 29948 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCG 30007 |||| ||| || |||||||| ||||| || | ||||||||||||||| ||||| || || Sbjct 77717 GTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACACCC 77658 Query 30008 AGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAA 30067 || |||||||| ||||||| ||||| | ||| || || ||||| || | |||||| Sbjct 77657 AGGCCCATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCACCATTCACCACGTAG 77598 Query 30068 AACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 ||||| || | ||||||||| || || || |||||||| Sbjct 77597 AACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATGAG 77560 Score = 87.8 bits (96), Expect = 1e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| || || || ||||||||||||||||| || || || || || | || Sbjct 75191 CATATCTTTGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCTAAATC 75132 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 || || | |||| ||||||| ||||| ||||||| ||| |||||||| || Sbjct 75131 CCCTTCAGCTCTGTTGGAGAAGCCCAGGCCATCCAAGAAGTCTCGGGACCCGTTGGCATC 75072 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 ||| || || || ||||| ||| || || || | ||| ||||| || Sbjct 75071 CCAAATTTTCACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGGATCC 75024 >seq3637 Length=615562 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || || ||||| |||| || || ||||| | | ||||| |||||| || || Sbjct 195980 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 195921 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| |||||||||||||| ||||||| ||||| || ||| Sbjct 195920 ATGGAGAACCAGGTCTTTCTACCCATAATCACCAAATTCTGTTTACCT 195873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 403769194708284